Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRV entry

There are 4 chains in PDB entry 8WRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G -19 T 8
D
 A 1 G 8
A
 SER 3PRO 443
B
 G -36 C 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8WRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 41Right-handed alpha
Helix 2
AA2
A
57 68Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
100 105Right-handed 310
Helix 5
AA5
A
124 133Right-handed alpha
Helix 6
AA6
A
173 184Right-handed alpha
Helix 7
AA7
A
189 199Right-handed alpha
Helix 8
AA8
A
211 237Right-handed alpha
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There are 4 sheets in PDB entry 8WRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
432 441anti-parallel
Strand 3
A
9 11anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
432 441anti-parallel
Strand 3
A
416 429anti-parallel
Strand 4
A
402 408anti-parallel
Strand 5
A
391 398anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
336 337parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
380 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il