Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WRZ entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8WRZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	LYS 357
L	SER 1	SER 244
R	GLU 106	MET 411
V	SER 357	CYS 358
V	ALA 361	ALA 361
V	LEU 365	LYS 367

There are 15 helices in PDB entry 8WRZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	71	Right-handed alpha
Helix 2	AA2	A	98	109	Right-handed alpha
Helix 3	AA3	A	156	163	Right-handed alpha
Helix 4	AA4	A	279	284	Right-handed 310
Helix 5	AA5	L	186	189	Right-handed 310
Helix 6	AA6	R	114	144	Right-handed alpha
Helix 7	AA7	R	145	149	Right-handed 310
Helix 8	AA8	R	150	178	Right-handed alpha
Helix 9	AA9	R	185	220	Right-handed alpha
Helix 10	AB1	R	220	228	Right-handed alpha
Helix 11	AB2	R	229	254	Right-handed alpha
Helix 12	AB3	R	272	312	Right-handed alpha
Helix 13	AB4	R	336	365	Right-handed alpha
Helix 14	AB5	R	372	399	Right-handed alpha
Helix 15	AB6	R	401	411	Right-handed alpha

There are 11 sheets in PDB entry 8WRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	8	12	anti-parallel
Strand 5	V	361	363	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	164	171	parallel
Strand 3	A	141	151	anti-parallel
Strand 4	A	52	62	anti-parallel
Strand 5	A	81	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	288	289	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	230	241	anti-parallel
Strand 5	A	252	258	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	127	131	first strand
Strand 2	L	141	149	anti-parallel
Strand 3	L	202	208	anti-parallel
Strand 4	L	192	197	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	136	first strand
Strand 2	L	241	242	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	181	184	first strand
Strand 2	L	169	176	anti-parallel
Strand 3	L	156	163	anti-parallel
Strand 4	L	217	224	anti-parallel
Strand 5	L	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WRZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRZ