Analysis of interatomic Contacts of Structural Units in PDB entry:
8WSQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WSQ entry

There are 3 chains in PDB entry 8WSQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLY 64	LEU 513
A	GLN 1	SER 132
B	GLN 1	LEU 110

There are 16 helices in PDB entry 8WSQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	113	136	Right-handed alpha
Helix 2	AA2	F	148	159	Right-handed alpha
Helix 3	AA3	F	162	171	Right-handed alpha
Helix 4	AA4	F	195	200	Right-handed alpha
Helix 5	AA5	F	217	240	Right-handed alpha
Helix 6	AA6	F	253	264	Right-handed alpha
Helix 7	AA7	F	267	277	Right-handed alpha
Helix 8	AA8	F	277	284	Right-handed alpha
Helix 9	AA9	F	354	356	Right-handed 310
Helix 10	AB1	F	370	372	Right-handed 310
Helix 11	AB2	F	376	384	Right-handed 310
Helix 12	AB3	F	473	478	Right-handed 310
Helix 13	AB4	F	492	508	Right-handed alpha
Helix 14	AB5	A	28	32	Right-handed 310
Helix 15	AB6	A	88	92	Right-handed 310
Helix 16	AB7	B	80	84	Right-handed 310

There are 12 sheets in PDB entry 8WSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	360	first strand
Strand 2	F	364	368	anti-parallel
Strand 3	F	77	88	parallel
Strand 4	F	308	318	anti-parallel
Strand 5	F	340	345	anti-parallel
Strand 6	F	348	352	anti-parallel
Strand 7	F	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	360	first strand
Strand 2	F	364	368	anti-parallel
Strand 3	F	77	88	parallel
Strand 4	F	68	72	anti-parallel
Strand 5	F	465	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	180	first strand
Strand 2	F	186	194	anti-parallel
Strand 3	F	90	99	parallel
Strand 4	F	296	305	anti-parallel
Strand 5	F	286	293	anti-parallel
Strand 6	F	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	322	first strand
Strand 2	F	333	336	anti-parallel
Strand 3	F	394	398	anti-parallel
Strand 4	F	487	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	404	407	first strand
Strand 2	F	411	416	anti-parallel
Strand 3	F	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	422	426	anti-parallel
Strand 3	F	449	452	anti-parallel
Strand 4	F	455	458	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	70	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	127	131	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	59	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	127	131	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	122	123	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	106	109	parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	106	109	parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	63	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WSQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WSQ