Analysis of interatomic Contacts of Structural Units in PDB entry:
8WSR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WSR entry

There are 2 chains in PDB entry 8WSR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 321PRO 513
A
 SER 19ALA 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8WSR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
324 329Right-handed alpha
Helix 2
AA2
C
336 340Right-handed 310
Helix 3
AA3
C
351 356Right-handed 310
Helix 4
AA4
C
370 376Right-handed 310
Helix 5
AA5
C
393 397Right-handed 310
Helix 6
AA6
C
403 409Right-handed alpha
Helix 7
AA7
C
425 430Right-handed alpha
Helix 8
AA8
C
488 492Right-handed 310
Helix 9
AA9
A
20 53Right-handed alpha
Helix 10
AB1
A
55 81Right-handed alpha
Helix 11
AB2
A
82 83Right-handed 310
Helix 12
AB3
A
84 88Right-handed 310
Helix 13
AB4
A
90 101Right-handed alpha
Helix 14
AB5
A
103 108Right-handed 310
Helix 15
AB6
A
109 130Right-handed alpha
Helix 16
AB7
A
146 155Right-handed alpha
Helix 17
AB8
A
157 172Right-handed alpha
Helix 18
AB9
A
173 175Right-handed 310
Helix 19
AC1
A
176 193Right-handed alpha
Helix 20
AC2
A
198 205Right-handed alpha
Helix 21
AC3
A
206 208Right-handed 310
Helix 22
AC4
A
220 232Right-handed alpha
Helix 23
AC5
A
233 252Right-handed alpha
Helix 24
AC6
A
265 267Right-handed 310
Helix 25
AC7
A
275 282Right-handed 310
Helix 26
AC8
A
293 300Right-handed alpha
Helix 27
AC9
A
303 317Right-handed alpha
Helix 28
AD1
A
324 331Right-handed alpha
Helix 29
AD2
A
365 385Right-handed alpha
Helix 30
AD3
A
389 393Right-handed 310
Helix 31
AD4
A
399 413Right-handed alpha
Helix 32
AD5
A
414 421Right-handed alpha
Helix 33
AD6
A
431 447Right-handed alpha
Helix 34
AD7
A
449 465Right-handed alpha
Helix 35
AD8
A
469 471Right-handed 310
Helix 36
AD9
A
472 484Right-handed alpha
Helix 37
AE1
A
498 502Right-handed 310
Helix 38
AE2
A
503 508Right-handed alpha
Helix 39
AE3
A
513 533Right-handed alpha
Helix 40
AE4
A
538 542Right-handed 310
Helix 41
AE5
A
547 561Right-handed alpha
Helix 42
AE6
A
565 575Right-handed alpha
Helix 43
AE7
A
581 599Right-handed alpha
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There are 6 sheets in PDB entry 8WSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 344first strand
Strand 2
C
381 389anti-parallel
Strand 3
C
494 502anti-parallel
Strand 4
C
418 424anti-parallel
Strand 5
C
363 367anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
348 349first strand
Strand 2
C
510 511parallel
Strand 3
C
378 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 441first strand
Strand 2
C
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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