Analysis of interatomic Contacts of Structural Units in PDB entry:
8WSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WSW entry

There are 4 chains in PDB entry 8WSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 330	LEU 632
B	ASP 330	LEU 632
C	ASP 330	LEU 632
D	ASP 330	LEU 632

There are 48 helices in PDB entry 8WSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	366	376	Right-handed alpha
Helix 2	AA2	A	376	383	Right-handed alpha
Helix 3	AA3	A	413	419	Right-handed alpha
Helix 4	AA4	A	424	445	Right-handed alpha
Helix 5	AA5	A	514	519	Right-handed alpha
Helix 6	AA6	A	526	541	Right-handed alpha
Helix 7	AA7	A	546	550	Right-handed 310
Helix 8	AA8	A	559	568	Right-handed alpha
Helix 9	AA9	A	575	584	Right-handed alpha
Helix 10	AB1	A	587	591	Right-handed 310
Helix 11	AB2	A	593	609	Right-handed alpha
Helix 12	AB3	A	616	630	Right-handed alpha
Helix 13	AB4	B	366	376	Right-handed alpha
Helix 14	AB5	B	376	383	Right-handed alpha
Helix 15	AB6	B	413	419	Right-handed alpha
Helix 16	AB7	B	424	445	Right-handed alpha
Helix 17	AB8	B	514	519	Right-handed alpha
Helix 18	AB9	B	526	541	Right-handed alpha
Helix 19	AC1	B	546	550	Right-handed 310
Helix 20	AC2	B	559	568	Right-handed alpha
Helix 21	AC3	B	575	584	Right-handed alpha
Helix 22	AC4	B	587	591	Right-handed 310
Helix 23	AC5	B	593	609	Right-handed alpha
Helix 24	AC6	B	616	630	Right-handed alpha
Helix 25	AC7	C	366	376	Right-handed alpha
Helix 26	AC8	C	376	383	Right-handed alpha
Helix 27	AC9	C	413	419	Right-handed alpha
Helix 28	AD1	C	424	445	Right-handed alpha
Helix 29	AD2	C	514	519	Right-handed alpha
Helix 30	AD3	C	526	541	Right-handed alpha
Helix 31	AD4	C	546	550	Right-handed 310
Helix 32	AD5	C	559	568	Right-handed alpha
Helix 33	AD6	C	575	584	Right-handed alpha
Helix 34	AD7	C	587	591	Right-handed 310
Helix 35	AD8	C	593	609	Right-handed alpha
Helix 36	AD9	C	616	630	Right-handed alpha
Helix 37	AE1	D	366	376	Right-handed alpha
Helix 38	AE2	D	376	383	Right-handed alpha
Helix 39	AE3	D	413	419	Right-handed alpha
Helix 40	AE4	D	424	445	Right-handed alpha
Helix 41	AE5	D	514	519	Right-handed alpha
Helix 42	AE6	D	526	541	Right-handed alpha
Helix 43	AE7	D	546	550	Right-handed 310
Helix 44	AE8	D	559	568	Right-handed alpha
Helix 45	AE9	D	575	584	Right-handed alpha
Helix 46	AF1	D	587	591	Right-handed 310
Helix 47	AF2	D	593	609	Right-handed alpha
Helix 48	AF3	D	616	630	Right-handed alpha

There are 12 sheets in PDB entry 8WSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	340	first strand
Strand 2	A	343	350	anti-parallel
Strand 3	A	356	362	anti-parallel
Strand 4	A	400	406	anti-parallel
Strand 5	A	391	397	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	457	460	anti-parallel
Strand 3	A	465	467	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	504	506	anti-parallel
Strand 3	C	552	553	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	475	477	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	338	first strand
Strand 2	B	345	350	anti-parallel
Strand 3	B	356	362	anti-parallel
Strand 4	B	400	406	anti-parallel
Strand 5	B	391	397	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	457	460	anti-parallel
Strand 3	B	465	467	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	504	506	anti-parallel
Strand 3	D	552	553	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	D	504	506	anti-parallel
Strand 3	D	475	477	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	340	first strand
Strand 2	C	343	350	anti-parallel
Strand 3	C	356	362	anti-parallel
Strand 4	C	400	406	anti-parallel
Strand 5	C	391	397	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	457	460	anti-parallel
Strand 3	C	465	467	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	338	first strand
Strand 2	D	345	350	anti-parallel
Strand 3	D	356	362	anti-parallel
Strand 4	D	400	406	anti-parallel
Strand 5	D	391	397	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	457	460	anti-parallel
Strand 3	D	465	467	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WSW