Analysis of interatomic Contacts of Structural Units in PDB entry:
8WT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WT4 entry

There are 2 chains in PDB entry 8WT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27ILE 181
B
 SER 340GLN 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8WT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 52Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
83 92Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
A
128 132Right-handed 310
Helix 6
AA6
B
341 352Right-handed alpha
Helix 7
AA7
B
366 373Right-handed alpha
Helix 8
AA8
B
376 388Right-handed alpha
Helix 9
AA9
B
399 404Right-handed alpha
Helix 10
AB1
B
411 415Right-handed 310
Helix 11
AB2
B
457 463Right-handed alpha
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There are 3 sheets in PDB entry 8WT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
110 112anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 140first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
159 168anti-parallel
Strand 4
A
171 174anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 410first strand
Strand 2
B
464 470anti-parallel
Strand 3
B
420 423anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
440 445anti-parallel
Strand 6
B
449 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il