Analysis of interatomic Contacts of Structural Units in PDB entry:
8WTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WTK entry

There is 1 chain in PDB entry 8WTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8WTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
60 72Right-handed alpha
Helix 4
AA4
A
91 101Right-handed alpha
Helix 5
AA5
A
127 135Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
157 163Right-handed alpha
Helix 8
AA8
A
171 176Right-handed 310
Helix 9
AA9
A
177 179Right-handed 310
Helix 10
AB1
A
180 194Right-handed alpha
Helix 11
AB2
A
206 220Right-handed alpha
Helix 12
AB3
A
233 241Right-handed alpha
Helix 13
AB4
A
252 257Right-handed 310
Helix 14
AB5
A
269 284Right-handed alpha
Helix 15
AB6
A
286 288Right-handed 310
Helix 16
AB7
A
298 315Right-handed alpha
Helix 17
AB8
A
324 327Right-handed 310
Helix 18
AB9
A
343 352Right-handed alpha
Helix 19
AC1
A
377 391Right-handed alpha
Helix 20
AC2
A
397 409Right-handed alpha
Helix 21
AC3
A
411 416Right-handed 310
Helix 22
AC4
A
417 430Right-handed alpha
Helix 23
AC5
A
434 443Right-handed alpha
Helix 24
AC6
A
451 456Right-handed 310
Helix 25
AC7
A
470 480Right-handed alpha
Helix 26
AC8
A
495 507Right-handed alpha
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There are 3 sheets in PDB entry 8WTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
81 85parallel
Strand 3
A
165 169parallel
Strand 4
A
198 202parallel
Strand 5
A
48 53parallel
Strand 6
A
223 227parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 249first strand
Strand 2
A
362 368parallel
Strand 3
A
336 340parallel
Strand 4
A
262 266parallel
Strand 5
A
318 322parallel
Strand 6
A
290 293parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
458 461anti-parallel
Strand 3
A
512 515parallel
Strand 4
A
483 486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il