Analysis of interatomic Contacts of Structural Units in PDB entry:
8WU1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WU1 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 8WU1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 6	ARG 363
H	VAL 5	VAL 221
L	SER 1	HIS 190
R	MET 109	GLU 428
R	CYS 430	CYS 430
R	ALA 433	ALA 433
R	LEU 437	ASP 440

There are 17 helices in PDB entry 8WU1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	98	108	Right-handed alpha
Helix 2	AA2	C	159	161	Right-handed 310
Helix 3	AA3	H	65	68	Right-handed 310
Helix 4	AA4	H	90	94	Right-handed 310
Helix 5	AA5	H	164	168	Right-handed 310
Helix 6	AA6	L	183	187	Right-handed 310
Helix 7	AA7	R	112	141	Right-handed alpha
Helix 8	AA8	R	145	150	Right-handed alpha
Helix 9	AA9	R	150	179	Right-handed alpha
Helix 10	AB1	R	187	220	Right-handed alpha
Helix 11	AB2	R	222	228	Right-handed alpha
Helix 12	AB3	R	229	250	Right-handed alpha
Helix 13	AB4	R	251	253	Right-handed 310
Helix 14	AB5	R	273	309	Right-handed alpha
Helix 15	AB6	R	340	369	Right-handed alpha
Helix 16	AB7	R	374	399	Right-handed alpha
Helix 17	AB8	R	401	408	Right-handed alpha

There are 15 sheets in PDB entry 8WU1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	19	22	anti-parallel
Strand 4	C	7	12	anti-parallel
Strand 5	R	433	436	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	169	171	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	87	first strand
Strand 2	C	52	61	anti-parallel
Strand 3	C	143	151	anti-parallel
Strand 4	C	163	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	288	289	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	214	222	anti-parallel
Strand 4	C	266	274	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	343	352	parallel
Strand 3	C	317	329	anti-parallel
Strand 4	C	228	241	anti-parallel
Strand 5	C	251	258	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	20	26	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	110	113	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	117	119	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	133	first strand
Strand 2	H	149	155	anti-parallel
Strand 3	H	186	192	anti-parallel
Strand 4	H	173	180	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	87	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	47	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	87	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	90	91	anti-parallel
Strand 6	L	98	99	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	132	138	anti-parallel
Strand 3	L	175	181	anti-parallel
Strand 4	L	159	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WU1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WU1