Analysis of interatomic Contacts of Structural Units in PDB entry:
8WUI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WUI entry

There are 4 chains in PDB entry 8WUI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 73	GLU 525
A	SER 73	GLU 545
D	SER 73	GLU 525
C	SER 73	GLU 545

There are 91 helices in PDB entry 8WUI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	79	97	Right-handed alpha
Helix 2	AA2	B	99	105	Right-handed alpha
Helix 3	AA3	B	114	132	Right-handed alpha
Helix 4	AA4	B	152	158	Right-handed alpha
Helix 5	AA5	B	161	167	Right-handed alpha
Helix 6	AA6	B	170	178	Right-handed alpha
Helix 7	AA7	B	181	193	Right-handed 310
Helix 8	AA8	B	194	208	Right-handed alpha
Helix 9	AA9	B	212	243	Right-handed alpha
Helix 10	AB1	B	244	248	Right-handed 310
Helix 11	AB2	B	265	269	Right-handed 310
Helix 12	AB3	B	270	287	Right-handed alpha
Helix 13	AB4	B	299	330	Right-handed alpha
Helix 14	AB5	B	332	351	Right-handed alpha
Helix 15	AB6	B	353	369	Right-handed alpha
Helix 16	AB7	B	382	394	Right-handed alpha
Helix 17	AB8	B	394	400	Right-handed alpha
Helix 18	AB9	B	401	405	Right-handed 310
Helix 19	AC1	B	408	418	Right-handed alpha
Helix 20	AC2	B	472	479	Right-handed alpha
Helix 21	AC3	B	499	509	Right-handed alpha
Helix 22	AC4	B	509	524	Right-handed alpha
Helix 23	AC5	A	79	98	Right-handed alpha
Helix 24	AC6	A	99	105	Right-handed alpha
Helix 25	AC7	A	113	131	Right-handed alpha
Helix 26	AC8	A	148	160	Right-handed alpha
Helix 27	AC9	A	160	167	Right-handed alpha
Helix 28	AD1	A	170	178	Right-handed alpha
Helix 29	AD2	A	181	187	Right-handed alpha
Helix 30	AD3	A	188	193	Right-handed 310
Helix 31	AD4	A	194	208	Right-handed alpha
Helix 32	AD5	A	212	242	Right-handed alpha
Helix 33	AD6	A	247	251	Right-handed 310
Helix 34	AD7	A	265	269	Right-handed 310
Helix 35	AD8	A	270	287	Right-handed alpha
Helix 36	AD9	A	298	330	Right-handed alpha
Helix 37	AE1	A	331	351	Right-handed alpha
Helix 38	AE2	A	353	380	Right-handed alpha
Helix 39	AE3	A	382	394	Right-handed alpha
Helix 40	AE4	A	394	400	Right-handed alpha
Helix 41	AE5	A	408	418	Right-handed alpha
Helix 42	AE6	A	473	478	Right-handed alpha
Helix 43	AE7	A	499	509	Right-handed alpha
Helix 44	AE8	A	509	521	Right-handed alpha
Helix 45	AE9	A	532	545	Right-handed alpha
Helix 46	AF1	D	79	97	Right-handed alpha
Helix 47	AF2	D	99	105	Right-handed alpha
Helix 48	AF3	D	114	132	Right-handed alpha
Helix 49	AF4	D	152	158	Right-handed alpha
Helix 50	AF5	D	161	167	Right-handed alpha
Helix 51	AF6	D	170	178	Right-handed alpha
Helix 52	AF7	D	181	193	Right-handed 310
Helix 53	AF8	D	194	208	Right-handed alpha
Helix 54	AF9	D	212	221	Right-handed alpha
Helix 55	AG1	D	223	243	Right-handed alpha
Helix 56	AG2	D	244	248	Right-handed 310
Helix 57	AG3	D	265	269	Right-handed 310
Helix 58	AG4	D	270	287	Right-handed alpha
Helix 59	AG5	D	299	330	Right-handed alpha
Helix 60	AG6	D	332	351	Right-handed alpha
Helix 61	AG7	D	353	369	Right-handed alpha
Helix 62	AG8	D	382	394	Right-handed alpha
Helix 63	AG9	D	394	400	Right-handed alpha
Helix 64	AH1	D	401	405	Right-handed 310
Helix 65	AH2	D	408	418	Right-handed alpha
Helix 66	AH3	D	472	479	Right-handed alpha
Helix 67	AH4	D	499	509	Right-handed alpha
Helix 68	AH5	D	509	524	Right-handed alpha
Helix 69	AH6	C	79	98	Right-handed alpha
Helix 70	AH7	C	99	105	Right-handed alpha
Helix 71	AH8	C	113	131	Right-handed alpha
Helix 72	AH9	C	148	160	Right-handed alpha
Helix 73	AI1	C	160	167	Right-handed alpha
Helix 74	AI2	C	170	178	Right-handed alpha
Helix 75	AI3	C	181	187	Right-handed alpha
Helix 76	AI4	C	188	193	Right-handed 310
Helix 77	AI5	C	194	208	Right-handed alpha
Helix 78	AI6	C	212	242	Right-handed alpha
Helix 79	AI7	C	247	251	Right-handed 310
Helix 80	AI8	C	265	269	Right-handed 310
Helix 81	AI9	C	270	287	Right-handed alpha
Helix 82	AJ1	C	298	330	Right-handed alpha
Helix 83	AJ2	C	331	351	Right-handed alpha
Helix 84	AJ3	C	353	380	Right-handed alpha
Helix 85	AJ4	C	382	394	Right-handed alpha
Helix 86	AJ5	C	394	400	Right-handed alpha
Helix 87	AJ6	C	408	418	Right-handed alpha
Helix 88	AJ7	C	473	478	Right-handed alpha
Helix 89	AJ8	C	499	509	Right-handed alpha
Helix 90	AJ9	C	509	521	Right-handed alpha
Helix 91	AK1	C	532	545	Right-handed alpha

There are 10 sheets in PDB entry 8WUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	144	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	439	445	anti-parallel
Strand 4	B	470	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	465	first strand
Strand 2	B	448	452	anti-parallel
Strand 3	B	485	488	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	494	498	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	469	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	447	450	anti-parallel
Strand 3	A	486	490	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	144	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	424	first strand
Strand 2	D	492	498	anti-parallel
Strand 3	D	439	445	anti-parallel
Strand 4	D	470	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	465	first strand
Strand 2	D	448	452	anti-parallel
Strand 3	D	485	488	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	C	494	498	anti-parallel
Strand 3	C	439	443	anti-parallel
Strand 4	C	469	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	465	first strand
Strand 2	C	447	450	anti-parallel
Strand 3	C	486	490	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WUI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WUI