Analysis of interatomic Contacts of Structural Units in PDB entry:
8WUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WUY entry

There are 2 chains in PDB entry 8WUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31PHE 267
B
 PRO 30PHE 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8WUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 44Right-handed alpha
Helix 2
AA2
A
68 92Right-handed alpha
Helix 3
AA3
A
100 124Right-handed alpha
Helix 4
AA4
A
125 128Right-handed 310
Helix 5
AA5
A
141 149Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
168 181Right-handed alpha
Helix 8
AA8
A
189 213Right-handed alpha
Helix 9
AA9
A
221 226Right-handed alpha
Helix 10
AB1
A
227 249Right-handed alpha
Helix 11
AB2
A
254 265Right-handed alpha
Helix 12
AB3
B
31 44Right-handed alpha
Helix 13
AB4
B
68 81Right-handed alpha
Helix 14
AB5
B
82 92Right-handed alpha
Helix 15
AB6
B
100 124Right-handed alpha
Helix 16
AB7
B
125 128Right-handed 310
Helix 17
AB8
B
144 149Right-handed alpha
Helix 18
AB9
B
150 165Right-handed alpha
Helix 19
AC1
B
168 181Right-handed alpha
Helix 20
AC2
B
189 210Right-handed alpha
Helix 21
AC3
B
220 226Right-handed alpha
Helix 22
AC4
B
226 249Right-handed alpha
Helix 23
AC5
B
254 264Right-handed alpha
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There are 2 sheets in PDB entry 8WUY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
138 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
138 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il