Analysis of interatomic Contacts of Structural Units in PDB entry:
8WV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WV4 entry

There are 5 chains in PDB entry 8WV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1PRO 206
B
 GLN 1PRO 206
C
 GLN 1PRO 206
D
 GLN 1PRO 206
E
 GLN 1PRO 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8WV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 46Right-handed 310
Helix 2
AA2
A
167 176Right-handed alpha
Helix 3
AA3
B
43 46Right-handed 310
Helix 4
AA4
B
167 176Right-handed alpha
Helix 5
AA5
C
43 46Right-handed 310
Helix 6
AA6
C
167 176Right-handed alpha
Helix 7
AA7
D
43 46Right-handed 310
Helix 8
AA8
D
167 176Right-handed alpha
Helix 9
AA9
E
43 46Right-handed 310
Helix 10
AB1
E
167 176Right-handed alpha
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There are 15 sheets in PDB entry 8WV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
119 120anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
32 41anti-parallel
Strand 5
A
154 162anti-parallel
Strand 6
A
7 11anti-parallel
Strand 7
A
199 202anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
49 55anti-parallel
Strand 5
A
132 135anti-parallel
Strand 6
A
19 23anti-parallel
Strand 7
A
191 195anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
106 111anti-parallel
Strand 3
B
119 120anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
106 111anti-parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
32 41anti-parallel
Strand 5
B
154 162anti-parallel
Strand 6
B
7 11anti-parallel
Strand 7
B
199 202anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
63 68anti-parallel
Strand 4
B
49 55anti-parallel
Strand 5
B
132 135anti-parallel
Strand 6
B
19 23anti-parallel
Strand 7
B
191 195anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 115first strand
Strand 2
C
106 111anti-parallel
Strand 3
C
119 120anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 115first strand
Strand 2
C
106 111anti-parallel
Strand 3
C
94 101anti-parallel
Strand 4
C
32 41anti-parallel
Strand 5
C
154 162anti-parallel
Strand 6
C
7 11anti-parallel
Strand 7
C
199 202anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
63 68anti-parallel
Strand 4
C
49 55anti-parallel
Strand 5
C
132 135anti-parallel
Strand 6
C
19 23anti-parallel
Strand 7
C
191 195anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 115first strand
Strand 2
D
106 111anti-parallel
Strand 3
D
119 120anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 115first strand
Strand 2
D
106 111anti-parallel
Strand 3
D
94 101anti-parallel
Strand 4
D
32 41anti-parallel
Strand 5
D
154 162anti-parallel
Strand 6
D
7 11anti-parallel
Strand 7
D
199 202anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 85first strand
Strand 2
D
72 77anti-parallel
Strand 3
D
63 68anti-parallel
Strand 4
D
49 55anti-parallel
Strand 5
D
132 135anti-parallel
Strand 6
D
19 23anti-parallel
Strand 7
D
191 195anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 115first strand
Strand 2
E
106 111anti-parallel
Strand 3
E
119 120anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 115first strand
Strand 2
E
106 111anti-parallel
Strand 3
E
94 101anti-parallel
Strand 4
E
32 41anti-parallel
Strand 5
E
154 162anti-parallel
Strand 6
E
7 11anti-parallel
Strand 7
E
199 202anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 85first strand
Strand 2
E
72 77anti-parallel
Strand 3
E
63 68anti-parallel
Strand 4
E
49 55anti-parallel
Strand 5
E
132 135anti-parallel
Strand 6
E
19 23anti-parallel
Strand 7
E
191 195anti-parallel
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