Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WVG entry

There are 3 chains in PDB entry 8WVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1ARG 224
L
 ASP 1GLU 213
A
 ALA 7LYS 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8WVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
L
121 128Right-handed alpha
Helix 4
AA4
L
183 189Right-handed alpha
Helix 5
AA5
A
8 14Right-handed alpha
Helix 6
AA6
A
19 39Right-handed alpha
Helix 7
AA7
A
40 48Right-handed 310
Helix 8
AA8
A
126 131Right-handed alpha
Helix 9
AA9
A
131 157Right-handed alpha
Helix 10
AB1
A
158 178Right-handed alpha
Helix 11
AB2
A
182 211Right-handed alpha
Helix 12
AB3
A
213 247Right-handed alpha
Helix 13
AB4
A
249 254Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
284 289Right-handed alpha
Helix 16
AB7
A
291 305Right-handed alpha
Helix 17
AB8
A
305 310Right-handed alpha
Helix 18
AB9
A
315 320Right-handed alpha
Helix 19
AC1
A
325 332Right-handed alpha
Helix 20
AC2
A
334 352Right-handed alpha
Helix 21
AC3
A
356 375Right-handed alpha
Helix 22
AC4
A
376 378Right-handed 310
Helix 23
AC5
A
380 383Right-handed 310
Helix 24
AC6
A
384 403Right-handed alpha
Helix 25
AC7
A
403 414Right-handed alpha
Helix 26
AC8
A
418 447Right-handed alpha
Helix 27
AC9
A
449 464Right-handed alpha
Helix 28
AD1
A
465 471Right-handed 310
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There are 10 sheets in PDB entry 8WVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 12first strand
Strand 2
H
118 122parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 12first strand
Strand 2
H
118 122parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
108 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 154anti-parallel
Strand 3
H
185 195anti-parallel
Strand 4
H
175 176anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 154anti-parallel
Strand 3
H
185 195anti-parallel
Strand 4
H
180 182anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
162 165first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 87anti-parallel
Strand 4
L
35 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 66anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 150first strand
Strand 2
L
191 198anti-parallel
Strand 3
L
201 210anti-parallel
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