Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WVU entry

There are 3 chains in PDB entry 8WVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28ARG 818
B
 ALA 39SER 143
C
 ILE 47LYS 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8WVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 128Right-handed 310
Helix 2
AA2
A
169 174Right-handed alpha
Helix 3
AA3
A
242 247Right-handed 310
Helix 4
AA4
A
337 342Right-handed alpha
Helix 5
AA5
A
466 472Right-handed 310
Helix 6
AA6
A
538 564Right-handed alpha
Helix 7
AA7
A
575 601Right-handed alpha
Helix 8
AA8
A
608 614Right-handed alpha
Helix 9
AA9
A
617 646Right-handed alpha
Helix 10
AB1
A
661 683Right-handed alpha
Helix 11
AB2
A
703 731Right-handed alpha
Helix 12
AB3
A
741 759Right-handed alpha
Helix 13
AB4
A
760 768Right-handed alpha
Helix 14
AB5
A
768 773Right-handed alpha
Helix 15
AB6
A
778 790Right-handed alpha
Helix 16
AB7
A
791 804Right-handed alpha
Helix 17
AB8
A
805 818Right-handed alpha
Helix 18
AB9
C
86 90Right-handed 310
Helix 19
AC1
C
121 132Right-handed alpha
Helix 20
AC2
C
144 150Right-handed alpha
Helix 21
AC3
C
168 178Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 8WVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
61 63parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
95 96parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
181 183parallel
Strand 3
A
205 207parallel
Strand 4
A
229 231parallel
Strand 5
A
252 254parallel
Strand 6
A
276 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
286 287parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
323 326parallel
Strand 3
A
347 349parallel
Strand 4
A
369 371parallel
Strand 5
A
393 395parallel
Strand 6
A
417 419parallel
Strand 7
A
438 440parallel
Strand 8
A
462 463parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
103 108parallel
Strand 3
C
134 140parallel
Strand 4
C
161 163parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il