Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WVV entry

There is 1 chain in PDB entry 8WVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 33ARG 817
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8WVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 126Right-handed alpha
Helix 2
AA2
A
169 174Right-handed alpha
Helix 3
AA3
A
241 247Right-handed 310
Helix 4
AA4
A
337 342Right-handed alpha
Helix 5
AA5
A
466 474Right-handed alpha
Helix 6
AA6
A
538 564Right-handed alpha
Helix 7
AA7
A
571 601Right-handed alpha
Helix 8
AA8
A
605 614Right-handed alpha
Helix 9
AA9
A
615 644Right-handed alpha
Helix 10
AB1
A
645 647Right-handed 310
Helix 11
AB2
A
658 675Right-handed alpha
Helix 12
AB3
A
677 682Right-handed alpha
Helix 13
AB4
A
705 729Right-handed alpha
Helix 14
AB5
A
742 768Right-handed alpha
Helix 15
AB6
A
780 789Right-handed alpha
Helix 16
AB7
A
792 797Right-handed alpha
Helix 17
AB8
A
806 817Right-handed alpha
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There are 5 sheets in PDB entry 8WVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
61 63parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Strand 6
A
157 159parallel
Strand 7
A
181 183parallel
Strand 8
A
205 207parallel
Strand 9
A
229 231parallel
Strand 10
A
252 254parallel
Strand 11
A
276 278parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
286 287parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
323 327parallel
Strand 3
A
347 349parallel
Strand 4
A
369 370parallel
Strand 5
A
393 394parallel
Strand 6
A
417 419parallel
Strand 7
A
438 440parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
403 404parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il