Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WVY entry

There are 3 chains in PDB entry 8WVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 29THR 820
E
 SER 34SER 133
F
 ASP 35SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8WVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 174Right-handed alpha
Helix 2
AA2
A
337 342Right-handed alpha
Helix 3
AA3
A
466 468Right-handed 310
Helix 4
AA4
A
469 474Right-handed alpha
Helix 5
AA5
A
540 564Right-handed alpha
Helix 6
AA6
A
571 601Right-handed alpha
Helix 7
AA7
A
609 614Right-handed alpha
Helix 8
AA8
A
616 647Right-handed alpha
Helix 9
AA9
A
658 679Right-handed alpha
Helix 10
AB1
A
680 682Right-handed 310
Helix 11
AB2
A
705 731Right-handed alpha
Helix 12
AB3
A
741 768Right-handed alpha
Helix 13
AB4
A
768 773Right-handed alpha
Helix 14
AB5
A
774 776Right-handed 310
Helix 15
AB6
A
778 790Right-handed alpha
Helix 16
AB7
A
792 803Right-handed alpha
Helix 17
AB8
A
808 820Right-handed alpha
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There are 11 sheets in PDB entry 8WVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
61 63parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Strand 6
A
157 159parallel
Strand 7
A
181 183parallel
Strand 8
A
205 207parallel
Strand 9
A
229 231parallel
Strand 10
A
252 254parallel
Strand 11
A
276 278parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
95 96parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
286 287parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
323 327parallel
Strand 3
A
347 349parallel
Strand 4
A
369 371parallel
Strand 5
A
393 395parallel
Strand 6
A
417 419parallel
Strand 7
A
438 440parallel
Strand 8
A
461 463parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
403 404parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 48first strand
Strand 2
E
58 67anti-parallel
Strand 3
F
73 77anti-parallel
Strand 4
F
89 92anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 92first strand
Strand 2
E
73 77anti-parallel
Strand 3
F
58 67anti-parallel
Strand 4
F
40 48anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 107first strand
Strand 2
E
117 130anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 100first strand
Strand 2
F
125 130anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
103 104first strand
Strand 2
F
120 121anti-parallel
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