Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WVZ entry

There are 8 chains in PDB entry 8WVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 289	SER 950
B	SER 289	SER 950
C	SER 289	SER 950
D	SER 289	SER 950
E	ALA 22	SER 950
F	SER 289	SER 950
H	T 2	T 26
I	A 1	A 4

There are172 helices in PDB entry 8WVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	289	296	Right-handed alpha
Helix 2	AA2	A	297	310	Right-handed alpha
Helix 3	AA3	A	311	317	Right-handed alpha
Helix 4	AA4	A	317	331	Right-handed alpha
Helix 5	AA5	A	335	343	Right-handed alpha
Helix 6	AA6	A	344	346	Right-handed 310
Helix 7	AA7	A	347	353	Right-handed alpha
Helix 8	AA8	A	356	365	Right-handed alpha
Helix 9	AA9	A	375	386	Right-handed alpha
Helix 10	AB1	A	388	409	Right-handed alpha
Helix 11	AB2	A	414	427	Right-handed alpha
Helix 12	AB3	A	466	476	Right-handed alpha
Helix 13	AB4	A	476	494	Right-handed alpha
Helix 14	AB5	A	498	516	Right-handed alpha
Helix 15	AB6	A	517	519	Right-handed 310
Helix 16	AB7	A	520	535	Right-handed alpha
Helix 17	AB8	A	591	605	Right-handed alpha
Helix 18	AB9	A	607	620	Right-handed alpha
Helix 19	AC1	A	641	654	Right-handed alpha
Helix 20	AC2	A	703	708	Right-handed alpha
Helix 21	AC3	A	746	752	Right-handed alpha
Helix 22	AC4	A	787	810	Right-handed alpha
Helix 23	AC5	A	823	831	Right-handed alpha
Helix 24	AC6	A	833	843	Right-handed alpha
Helix 25	AC7	A	854	870	Right-handed alpha
Helix 26	AC8	A	877	882	Right-handed alpha
Helix 27	AC9	B	290	296	Right-handed alpha
Helix 28	AD1	B	296	309	Right-handed alpha
Helix 29	AD2	B	311	317	Right-handed alpha
Helix 30	AD3	B	317	331	Right-handed alpha
Helix 31	AD4	B	335	344	Right-handed alpha
Helix 32	AD5	B	349	354	Right-handed alpha
Helix 33	AD6	B	359	364	Right-handed alpha
Helix 34	AD7	B	377	386	Right-handed alpha
Helix 35	AD8	B	388	409	Right-handed alpha
Helix 36	AD9	B	414	426	Right-handed alpha
Helix 37	AE1	B	466	476	Right-handed alpha
Helix 38	AE2	B	476	494	Right-handed alpha
Helix 39	AE3	B	497	502	Right-handed alpha
Helix 40	AE4	B	502	516	Right-handed alpha
Helix 41	AE5	B	517	519	Right-handed 310
Helix 42	AE6	B	520	535	Right-handed alpha
Helix 43	AE7	B	591	605	Right-handed alpha
Helix 44	AE8	B	607	620	Right-handed alpha
Helix 45	AE9	B	641	654	Right-handed alpha
Helix 46	AF1	B	663	668	Right-handed alpha
Helix 47	AF2	B	677	681	Right-handed 310
Helix 48	AF3	B	748	751	Right-handed 310
Helix 49	AF4	B	778	783	Right-handed alpha
Helix 50	AF5	B	787	808	Right-handed alpha
Helix 51	AF6	B	822	831	Right-handed alpha
Helix 52	AF7	B	833	843	Right-handed alpha
Helix 53	AF8	B	854	870	Right-handed alpha
Helix 54	AF9	B	876	887	Right-handed alpha
Helix 55	AG1	C	290	297	Right-handed alpha
Helix 56	AG2	C	297	307	Right-handed alpha
Helix 57	AG3	C	311	317	Right-handed alpha
Helix 58	AG4	C	317	331	Right-handed alpha
Helix 59	AG5	C	335	345	Right-handed alpha
Helix 60	AG6	C	347	352	Right-handed alpha
Helix 61	AG7	C	354	367	Right-handed alpha
Helix 62	AG8	C	374	386	Right-handed alpha
Helix 63	AG9	C	388	409	Right-handed alpha
Helix 64	AH1	C	414	425	Right-handed alpha
Helix 65	AH2	C	466	476	Right-handed alpha
Helix 66	AH3	C	476	494	Right-handed alpha
Helix 67	AH4	C	498	516	Right-handed alpha
Helix 68	AH5	C	517	519	Right-handed 310
Helix 69	AH6	C	520	535	Right-handed alpha
Helix 70	AH7	C	591	605	Right-handed alpha
Helix 71	AH8	C	607	620	Right-handed alpha
Helix 72	AH9	C	621	623	Right-handed 310
Helix 73	AI1	C	641	657	Right-handed alpha
Helix 74	AI2	C	662	666	Right-handed 310
Helix 75	AI3	C	705	710	Right-handed alpha
Helix 76	AI4	C	746	752	Right-handed alpha
Helix 77	AI5	C	778	783	Right-handed alpha
Helix 78	AI6	C	787	809	Right-handed alpha
Helix 79	AI7	C	812	816	Right-handed 310
Helix 80	AI8	C	823	831	Right-handed alpha
Helix 81	AI9	C	833	843	Right-handed alpha
Helix 82	AJ1	C	855	870	Right-handed alpha
Helix 83	AJ2	C	877	882	Right-handed alpha
Helix 84	AJ3	C	883	886	Right-handed 310
Helix 85	AJ4	C	888	891	Right-handed 310
Helix 86	AJ5	D	290	297	Right-handed alpha
Helix 87	AJ6	D	297	309	Right-handed alpha
Helix 88	AJ7	D	312	317	Right-handed alpha
Helix 89	AJ8	D	317	331	Right-handed alpha
Helix 90	AJ9	D	335	345	Right-handed alpha
Helix 91	AK1	D	347	351	Right-handed 310
Helix 92	AK2	D	353	368	Right-handed alpha
Helix 93	AK3	D	377	386	Right-handed alpha
Helix 94	AK4	D	388	409	Right-handed alpha
Helix 95	AK5	D	414	427	Right-handed alpha
Helix 96	AK6	D	466	476	Right-handed alpha
Helix 97	AK7	D	476	494	Right-handed alpha
Helix 98	AK8	D	497	516	Right-handed alpha
Helix 99	AK9	D	517	519	Right-handed 310
Helix 100	AL1	D	520	535	Right-handed alpha
Helix 101	AL2	D	591	605	Right-handed alpha
Helix 102	AL3	D	607	620	Right-handed alpha
Helix 103	AL4	D	641	654	Right-handed alpha
Helix 104	AL5	D	662	666	Right-handed 310
Helix 105	AL6	D	704	710	Right-handed alpha
Helix 106	AL7	D	746	752	Right-handed alpha
Helix 107	AL8	D	778	783	Right-handed alpha
Helix 108	AL9	D	787	810	Right-handed alpha
Helix 109	AM1	D	812	816	Right-handed 310
Helix 110	AM2	D	819	831	Right-handed alpha
Helix 111	AM3	D	833	843	Right-handed alpha
Helix 112	AM4	D	854	870	Right-handed alpha
Helix 113	AM5	D	880	886	Right-handed alpha
Helix 114	AM6	D	889	893	Right-handed 310
Helix 115	AM7	E	24	34	Right-handed alpha
Helix 116	AM8	E	61	79	Right-handed alpha
Helix 117	AM9	E	111	128	Right-handed alpha
Helix 118	AN1	E	167	179	Right-handed alpha
Helix 119	AN2	E	181	190	Right-handed alpha
Helix 120	AN3	E	251	257	Right-handed alpha
Helix 121	AN4	E	291	296	Right-handed alpha
Helix 122	AN5	E	297	309	Right-handed alpha
Helix 123	AN6	E	317	330	Right-handed alpha
Helix 124	AN7	E	335	343	Right-handed alpha
Helix 125	AN8	E	356	367	Right-handed alpha
Helix 126	AN9	E	376	386	Right-handed alpha
Helix 127	AO1	E	388	409	Right-handed alpha
Helix 128	AO2	E	414	427	Right-handed alpha
Helix 129	AO3	E	466	494	Right-handed alpha
Helix 130	AO4	E	498	516	Right-handed alpha
Helix 131	AO5	E	517	519	Right-handed 310
Helix 132	AO6	E	520	535	Right-handed alpha
Helix 133	AO7	E	591	605	Right-handed alpha
Helix 134	AO8	E	607	620	Right-handed alpha
Helix 135	AO9	E	621	623	Right-handed 310
Helix 136	AP1	E	641	654	Right-handed alpha
Helix 137	AP2	E	662	666	Right-handed 310
Helix 138	AP3	E	678	682	Right-handed 310
Helix 139	AP4	E	705	710	Right-handed alpha
Helix 140	AP5	E	746	752	Right-handed alpha
Helix 141	AP6	E	777	783	Right-handed alpha
Helix 142	AP7	E	787	810	Right-handed alpha
Helix 143	AP8	E	822	831	Right-handed alpha
Helix 144	AP9	E	833	843	Right-handed alpha
Helix 145	AQ1	E	854	870	Right-handed alpha
Helix 146	AQ2	E	876	886	Right-handed alpha
Helix 147	AQ3	E	888	893	Right-handed 310
Helix 148	AQ4	F	291	296	Right-handed alpha
Helix 149	AQ5	F	297	310	Right-handed alpha
Helix 150	AQ6	F	312	317	Right-handed alpha
Helix 151	AQ7	F	317	330	Right-handed alpha
Helix 152	AQ8	F	335	345	Right-handed alpha
Helix 153	AQ9	F	356	366	Right-handed alpha
Helix 154	AR1	F	376	384	Right-handed alpha
Helix 155	AR2	F	388	409	Right-handed alpha
Helix 156	AR3	F	414	427	Right-handed alpha
Helix 157	AR4	F	466	476	Right-handed alpha
Helix 158	AR5	F	476	494	Right-handed alpha
Helix 159	AR6	F	498	516	Right-handed alpha
Helix 160	AR7	F	517	519	Right-handed 310
Helix 161	AR8	F	520	535	Right-handed alpha
Helix 162	AR9	F	591	605	Right-handed alpha
Helix 163	AS1	F	607	620	Right-handed alpha
Helix 164	AS2	F	641	654	Right-handed alpha
Helix 165	AS3	F	705	710	Right-handed alpha
Helix 166	AS4	F	748	751	Right-handed 310
Helix 167	AS5	F	787	810	Right-handed alpha
Helix 168	AS6	F	823	831	Right-handed alpha
Helix 169	AS7	F	833	843	Right-handed alpha
Helix 170	AS8	F	855	870	Right-handed alpha
Helix 171	AS9	F	877	884	Right-handed alpha
Helix 172	AT1	F	888	893	Right-handed 310

There are 29 sheets in PDB entry 8WVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	460	463	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	556	559	anti-parallel
Strand 3	A	566	568	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	688	691	parallel
Strand 3	A	731	735	parallel
Strand 4	A	631	635	parallel
Strand 5	A	753	757	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	716	first strand
Strand 2	A	724	726	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	440	445	anti-parallel
Strand 3	B	460	463	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	553	first strand
Strand 2	B	556	559	anti-parallel
Strand 3	B	566	568	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	660	first strand
Strand 2	B	688	690	parallel
Strand 3	B	731	733	parallel
Strand 4	B	631	635	parallel
Strand 5	B	753	757	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	724	727	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	762	first strand
Strand 2	B	773	774	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	440	445	anti-parallel
Strand 3	C	460	463	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	553	first strand
Strand 2	C	556	559	anti-parallel
Strand 3	C	566	568	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	660	first strand
Strand 2	C	688	691	parallel
Strand 3	C	731	736	parallel
Strand 4	C	631	635	parallel
Strand 5	C	753	757	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	716	first strand
Strand 2	C	724	726	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	761	762	first strand
Strand 2	C	773	774	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	893	895	first strand
Strand 2	C	901	903	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	440	445	anti-parallel
Strand 3	D	460	463	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	553	first strand
Strand 2	D	556	559	anti-parallel
Strand 3	D	566	568	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	659	660	first strand
Strand 2	D	688	691	parallel
Strand 3	D	731	734	parallel
Strand 4	D	631	634	parallel
Strand 5	D	753	756	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	49	51	anti-parallel
Strand 3	E	84	86	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	156	160	anti-parallel
Strand 3	E	140	145	anti-parallel
Strand 4	E	222	228	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	434	first strand
Strand 2	E	440	445	anti-parallel
Strand 3	E	460	463	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	550	553	first strand
Strand 2	E	556	559	anti-parallel
Strand 3	E	566	568	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	658	660	first strand
Strand 2	E	688	691	parallel
Strand 3	E	731	735	parallel
Strand 4	E	632	636	parallel
Strand 5	E	754	758	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	713	714	first strand
Strand 2	E	726	727	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	440	445	anti-parallel
Strand 3	F	460	463	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	553	first strand
Strand 2	F	556	559	anti-parallel
Strand 3	F	566	568	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	658	660	first strand
Strand 2	F	688	691	parallel
Strand 3	F	731	734	parallel
Strand 4	F	631	633	parallel
Strand 5	F	753	754	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	698	699	first strand
Strand 2	F	740	741	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	714	717	first strand
Strand 2	F	723	726	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WVZ