Analysis of interatomic Contacts of Structural Units in PDB entry:
8WW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WW6 entry

There are 8 chains in PDB entry 8WW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	T 1	T 25
I	A 1	A 4
B	SER 289	SER 950
A	SER 289	SER 950
C	SER 289	SER 950
D	SER 289	SER 950
E	SER 289	SER 950
F	SER 289	SER 950

There are174 helices in PDB entry 8WW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	289	297	Right-handed alpha
Helix 2	AA2	B	297	308	Right-handed alpha
Helix 3	AA3	B	311	317	Right-handed alpha
Helix 4	AA4	B	317	331	Right-handed alpha
Helix 5	AA5	B	335	344	Right-handed alpha
Helix 6	AA6	B	359	364	Right-handed alpha
Helix 7	AA7	B	377	386	Right-handed alpha
Helix 8	AA8	B	388	409	Right-handed alpha
Helix 9	AA9	B	414	427	Right-handed alpha
Helix 10	AB1	B	466	494	Right-handed alpha
Helix 11	AB2	B	497	502	Right-handed alpha
Helix 12	AB3	B	502	516	Right-handed alpha
Helix 13	AB4	B	517	519	Right-handed 310
Helix 14	AB5	B	520	535	Right-handed alpha
Helix 15	AB6	B	591	605	Right-handed alpha
Helix 16	AB7	B	607	620	Right-handed alpha
Helix 17	AB8	B	641	654	Right-handed alpha
Helix 18	AB9	B	662	668	Right-handed alpha
Helix 19	AC1	B	705	710	Right-handed alpha
Helix 20	AC2	B	748	751	Right-handed 310
Helix 21	AC3	B	777	783	Right-handed alpha
Helix 22	AC4	B	787	808	Right-handed alpha
Helix 23	AC5	B	822	831	Right-handed alpha
Helix 24	AC6	B	833	843	Right-handed alpha
Helix 25	AC7	B	854	870	Right-handed alpha
Helix 26	AC8	B	876	878	Right-handed 310
Helix 27	AC9	B	879	887	Right-handed alpha
Helix 28	AD1	B	888	892	Right-handed 310
Helix 29	AD2	A	291	296	Right-handed alpha
Helix 30	AD3	A	298	308	Right-handed alpha
Helix 31	AD4	A	311	317	Right-handed alpha
Helix 32	AD5	A	317	331	Right-handed alpha
Helix 33	AD6	A	335	343	Right-handed alpha
Helix 34	AD7	A	344	345	Right-handed 310
Helix 35	AD8	A	346	350	Right-handed 310
Helix 36	AD9	A	356	364	Right-handed alpha
Helix 37	AE1	A	365	367	Right-handed 310
Helix 38	AE2	A	374	386	Right-handed alpha
Helix 39	AE3	A	388	409	Right-handed alpha
Helix 40	AE4	A	414	427	Right-handed alpha
Helix 41	AE5	A	466	494	Right-handed alpha
Helix 42	AE6	A	498	516	Right-handed alpha
Helix 43	AE7	A	517	519	Right-handed 310
Helix 44	AE8	A	520	535	Right-handed alpha
Helix 45	AE9	A	591	605	Right-handed alpha
Helix 46	AF1	A	607	620	Right-handed alpha
Helix 47	AF2	A	621	623	Right-handed 310
Helix 48	AF3	A	641	654	Right-handed alpha
Helix 49	AF4	A	662	667	Right-handed alpha
Helix 50	AF5	A	702	708	Right-handed alpha
Helix 51	AF6	A	746	752	Right-handed alpha
Helix 52	AF7	A	777	783	Right-handed alpha
Helix 53	AF8	A	787	810	Right-handed alpha
Helix 54	AF9	A	822	830	Right-handed alpha
Helix 55	AG1	A	833	843	Right-handed alpha
Helix 56	AG2	A	854	870	Right-handed alpha
Helix 57	AG3	A	877	882	Right-handed alpha
Helix 58	AG4	A	888	893	Right-handed 310
Helix 59	AG5	C	290	297	Right-handed alpha
Helix 60	AG6	C	297	308	Right-handed alpha
Helix 61	AG7	C	311	317	Right-handed alpha
Helix 62	AG8	C	317	331	Right-handed alpha
Helix 63	AG9	C	335	344	Right-handed alpha
Helix 64	AH1	C	347	352	Right-handed alpha
Helix 65	AH2	C	354	367	Right-handed alpha
Helix 66	AH3	C	377	386	Right-handed alpha
Helix 67	AH4	C	388	409	Right-handed alpha
Helix 68	AH5	C	414	425	Right-handed alpha
Helix 69	AH6	C	466	494	Right-handed alpha
Helix 70	AH7	C	498	516	Right-handed alpha
Helix 71	AH8	C	517	519	Right-handed 310
Helix 72	AH9	C	520	535	Right-handed alpha
Helix 73	AI1	C	591	605	Right-handed alpha
Helix 74	AI2	C	607	620	Right-handed alpha
Helix 75	AI3	C	641	654	Right-handed alpha
Helix 76	AI4	C	662	667	Right-handed alpha
Helix 77	AI5	C	677	682	Right-handed 310
Helix 78	AI6	C	705	710	Right-handed alpha
Helix 79	AI7	C	746	752	Right-handed alpha
Helix 80	AI8	C	777	783	Right-handed alpha
Helix 81	AI9	C	787	808	Right-handed alpha
Helix 82	AJ1	C	822	831	Right-handed alpha
Helix 83	AJ2	C	834	843	Right-handed alpha
Helix 84	AJ3	C	855	870	Right-handed alpha
Helix 85	AJ4	C	876	881	Right-handed alpha
Helix 86	AJ5	C	888	891	Right-handed 310
Helix 87	AJ6	D	290	297	Right-handed alpha
Helix 88	AJ7	D	297	310	Right-handed alpha
Helix 89	AJ8	D	311	317	Right-handed alpha
Helix 90	AJ9	D	317	331	Right-handed alpha
Helix 91	AK1	D	335	344	Right-handed alpha
Helix 92	AK2	D	347	351	Right-handed 310
Helix 93	AK3	D	353	366	Right-handed alpha
Helix 94	AK4	D	377	386	Right-handed alpha
Helix 95	AK5	D	388	409	Right-handed alpha
Helix 96	AK6	D	414	427	Right-handed alpha
Helix 97	AK7	D	466	476	Right-handed alpha
Helix 98	AK8	D	476	494	Right-handed alpha
Helix 99	AK9	D	497	516	Right-handed alpha
Helix 100	AL1	D	517	519	Right-handed 310
Helix 101	AL2	D	520	535	Right-handed alpha
Helix 102	AL3	D	591	605	Right-handed alpha
Helix 103	AL4	D	607	620	Right-handed alpha
Helix 104	AL5	D	621	623	Right-handed 310
Helix 105	AL6	D	641	654	Right-handed alpha
Helix 106	AL7	D	662	666	Right-handed 310
Helix 107	AL8	D	679	683	Right-handed 310
Helix 108	AL9	D	704	710	Right-handed alpha
Helix 109	AM1	D	746	752	Right-handed alpha
Helix 110	AM2	D	777	783	Right-handed alpha
Helix 111	AM3	D	787	810	Right-handed alpha
Helix 112	AM4	D	819	831	Right-handed alpha
Helix 113	AM5	D	833	843	Right-handed alpha
Helix 114	AM6	D	854	870	Right-handed alpha
Helix 115	AM7	D	878	887	Right-handed alpha
Helix 116	AM8	D	888	893	Right-handed 310
Helix 117	AM9	E	291	296	Right-handed alpha
Helix 118	AN1	E	297	310	Right-handed alpha
Helix 119	AN2	E	312	317	Right-handed alpha
Helix 120	AN3	E	317	331	Right-handed alpha
Helix 121	AN4	E	335	343	Right-handed alpha
Helix 122	AN5	E	353	366	Right-handed alpha
Helix 123	AN6	E	377	386	Right-handed alpha
Helix 124	AN7	E	388	409	Right-handed alpha
Helix 125	AN8	E	414	427	Right-handed alpha
Helix 126	AN9	E	466	476	Right-handed alpha
Helix 127	AO1	E	476	494	Right-handed alpha
Helix 128	AO2	E	498	516	Right-handed alpha
Helix 129	AO3	E	517	519	Right-handed 310
Helix 130	AO4	E	520	535	Right-handed alpha
Helix 131	AO5	E	591	605	Right-handed alpha
Helix 132	AO6	E	607	620	Right-handed alpha
Helix 133	AO7	E	621	623	Right-handed 310
Helix 134	AO8	E	641	654	Right-handed alpha
Helix 135	AO9	E	662	666	Right-handed 310
Helix 136	AP1	E	678	682	Right-handed 310
Helix 137	AP2	E	705	710	Right-handed alpha
Helix 138	AP3	E	746	752	Right-handed alpha
Helix 139	AP4	E	777	783	Right-handed alpha
Helix 140	AP5	E	787	810	Right-handed alpha
Helix 141	AP6	E	812	816	Right-handed 310
Helix 142	AP7	E	819	831	Right-handed alpha
Helix 143	AP8	E	833	843	Right-handed alpha
Helix 144	AP9	E	854	870	Right-handed alpha
Helix 145	AQ1	E	876	886	Right-handed alpha
Helix 146	AQ2	E	888	893	Right-handed 310
Helix 147	AQ3	F	290	294	Right-handed alpha
Helix 148	AQ4	F	297	310	Right-handed alpha
Helix 149	AQ5	F	311	317	Right-handed alpha
Helix 150	AQ6	F	317	330	Right-handed alpha
Helix 151	AQ7	F	335	344	Right-handed alpha
Helix 152	AQ8	F	358	367	Right-handed alpha
Helix 153	AQ9	F	377	384	Right-handed alpha
Helix 154	AR1	F	388	409	Right-handed alpha
Helix 155	AR2	F	414	427	Right-handed alpha
Helix 156	AR3	F	466	494	Right-handed alpha
Helix 157	AR4	F	497	516	Right-handed alpha
Helix 158	AR5	F	517	519	Right-handed 310
Helix 159	AR6	F	520	535	Right-handed alpha
Helix 160	AR7	F	591	605	Right-handed alpha
Helix 161	AR8	F	607	620	Right-handed alpha
Helix 162	AR9	F	641	654	Right-handed alpha
Helix 163	AS1	F	662	668	Right-handed alpha
Helix 164	AS2	F	677	682	Right-handed alpha
Helix 165	AS3	F	704	710	Right-handed alpha
Helix 166	AS4	F	748	751	Right-handed 310
Helix 167	AS5	F	778	783	Right-handed alpha
Helix 168	AS6	F	787	810	Right-handed alpha
Helix 169	AS7	F	812	816	Right-handed 310
Helix 170	AS8	F	822	831	Right-handed alpha
Helix 171	AS9	F	833	843	Right-handed alpha
Helix 172	AT1	F	855	870	Right-handed alpha
Helix 173	AT2	F	876	884	Right-handed alpha
Helix 174	AT3	F	888	893	Right-handed 310

There are 29 sheets in PDB entry 8WW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	440	445	anti-parallel
Strand 3	B	460	463	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	553	first strand
Strand 2	B	556	559	anti-parallel
Strand 3	B	566	568	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	635	first strand
Strand 2	B	753	757	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	660	first strand
Strand 2	B	688	690	parallel
Strand 3	B	731	733	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	740	741	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	724	727	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	762	first strand
Strand 2	B	773	774	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	460	463	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	556	559	anti-parallel
Strand 3	A	566	568	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	688	691	parallel
Strand 3	A	731	735	parallel
Strand 4	A	631	635	parallel
Strand 5	A	753	757	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	718	first strand
Strand 2	A	721	726	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	440	445	anti-parallel
Strand 3	C	460	463	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	553	first strand
Strand 2	C	556	559	anti-parallel
Strand 3	C	566	568	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	635	first strand
Strand 2	C	754	757	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	661	first strand
Strand 2	C	688	691	parallel
Strand 3	C	731	734	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	716	first strand
Strand 2	C	724	727	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	893	895	first strand
Strand 2	C	901	903	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	440	445	anti-parallel
Strand 3	D	460	463	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	553	first strand
Strand 2	D	556	559	anti-parallel
Strand 3	D	566	568	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	660	first strand
Strand 2	D	688	691	parallel
Strand 3	D	731	735	parallel
Strand 4	D	631	634	parallel
Strand 5	D	753	756	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	714	716	first strand
Strand 2	D	724	726	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	434	first strand
Strand 2	E	440	445	anti-parallel
Strand 3	E	460	463	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	550	553	first strand
Strand 2	E	556	559	anti-parallel
Strand 3	E	566	568	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	658	660	first strand
Strand 2	E	688	691	parallel
Strand 3	E	731	734	parallel
Strand 4	E	631	635	parallel
Strand 5	E	754	757	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	440	445	anti-parallel
Strand 3	F	460	463	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	553	first strand
Strand 2	F	556	559	anti-parallel
Strand 3	F	566	568	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	658	660	first strand
Strand 2	F	688	691	parallel
Strand 3	F	731	736	parallel
Strand 4	F	631	635	parallel
Strand 5	F	753	754	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	698	699	first strand
Strand 2	F	740	741	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	714	717	first strand
Strand 2	F	723	726	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WW6