Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WWD entry

There are 4 chains in PDB entry 8WWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -10	PRO 327
B	HIS -9	PRO 327
C	GLY -1	PRO 327
D	HIS -9	PRO 327

There are 48 helices in PDB entry 8WWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	45	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	93	97	Right-handed 310
Helix 4	AA4	A	131	136	Right-handed alpha
Helix 5	AA5	A	137	155	Right-handed alpha
Helix 6	AA6	A	169	182	Right-handed alpha
Helix 7	AA7	A	193	202	Right-handed alpha
Helix 8	AA8	A	211	215	Right-handed 310
Helix 9	AA9	A	228	238	Right-handed alpha
Helix 10	AB1	A	258	265	Right-handed alpha
Helix 11	AB2	A	276	289	Right-handed alpha
Helix 12	AB3	A	305	315	Right-handed alpha
Helix 13	AB4	B	37	45	Right-handed alpha
Helix 14	AB5	B	86	91	Right-handed alpha
Helix 15	AB6	B	93	97	Right-handed 310
Helix 16	AB7	B	131	136	Right-handed alpha
Helix 17	AB8	B	137	155	Right-handed alpha
Helix 18	AB9	B	169	182	Right-handed alpha
Helix 19	AC1	B	193	202	Right-handed alpha
Helix 20	AC2	B	210	214	Right-handed 310
Helix 21	AC3	B	228	238	Right-handed alpha
Helix 22	AC4	B	258	265	Right-handed alpha
Helix 23	AC5	B	276	289	Right-handed alpha
Helix 24	AC6	B	305	315	Right-handed alpha
Helix 25	AC7	C	37	45	Right-handed alpha
Helix 26	AC8	C	86	92	Right-handed alpha
Helix 27	AC9	C	93	97	Right-handed 310
Helix 28	AD1	C	131	136	Right-handed alpha
Helix 29	AD2	C	137	155	Right-handed alpha
Helix 30	AD3	C	169	182	Right-handed alpha
Helix 31	AD4	C	193	201	Right-handed alpha
Helix 32	AD5	C	210	215	Right-handed 310
Helix 33	AD6	C	228	238	Right-handed alpha
Helix 34	AD7	C	258	265	Right-handed alpha
Helix 35	AD8	C	276	289	Right-handed alpha
Helix 36	AD9	C	305	316	Right-handed alpha
Helix 37	AE1	D	37	45	Right-handed alpha
Helix 38	AE2	D	86	91	Right-handed alpha
Helix 39	AE3	D	93	97	Right-handed 310
Helix 40	AE4	D	131	136	Right-handed alpha
Helix 41	AE5	D	137	155	Right-handed alpha
Helix 42	AE6	D	169	182	Right-handed alpha
Helix 43	AE7	D	193	202	Right-handed alpha
Helix 44	AE8	D	210	215	Right-handed 310
Helix 45	AE9	D	228	238	Right-handed alpha
Helix 46	AF1	D	258	265	Right-handed alpha
Helix 47	AF2	D	276	289	Right-handed alpha
Helix 48	AF3	D	305	315	Right-handed alpha

There are 20 sheets in PDB entry 8WWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	18	first strand
Strand 2	A	0	8	anti-parallel
Strand 3	A	55	56	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	26	35	anti-parallel
Strand 3	A	60	66	anti-parallel
Strand 4	A	74	77	anti-parallel
Strand 5	A	123	125	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	26	35	anti-parallel
Strand 3	A	323	326	anti-parallel
Strand 4	A	299	302	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	101	102	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	186	190	parallel
Strand 3	A	162	166	parallel
Strand 4	A	219	224	parallel
Strand 5	A	239	247	parallel
Strand 6	A	268	271	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	17	first strand
Strand 2	B	1	8	anti-parallel
Strand 3	B	55	56	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	26	35	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	74	77	anti-parallel
Strand 5	B	123	125	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	26	35	anti-parallel
Strand 3	B	323	326	anti-parallel
Strand 4	B	299	302	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	101	102	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	186	190	parallel
Strand 3	B	162	166	parallel
Strand 4	B	219	224	parallel
Strand 5	B	239	247	parallel
Strand 6	B	268	271	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	8	first strand
Strand 2	C	11	18	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	26	35	anti-parallel
Strand 3	C	60	66	anti-parallel
Strand 4	C	74	77	anti-parallel
Strand 5	C	123	125	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	26	35	anti-parallel
Strand 3	C	322	326	anti-parallel
Strand 4	C	298	302	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	101	102	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	186	190	parallel
Strand 3	C	162	166	parallel
Strand 4	C	219	224	parallel
Strand 5	C	239	247	parallel
Strand 6	C	268	271	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	18	first strand
Strand 2	D	0	8	anti-parallel
Strand 3	D	55	56	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	26	35	anti-parallel
Strand 3	D	60	66	anti-parallel
Strand 4	D	74	77	anti-parallel
Strand 5	D	123	125	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	26	35	anti-parallel
Strand 3	D	322	326	anti-parallel
Strand 4	D	298	302	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	101	102	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	186	190	parallel
Strand 3	D	162	166	parallel
Strand 4	D	219	224	parallel
Strand 5	D	239	247	parallel
Strand 6	D	268	271	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWD