Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WWE entry

There are 4 chains in PDB entry 8WWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LEU 406
B	THR 2	GLU 407
C	MET 1	LEU 406
D	THR 2	ALA 404

There are 62 helices in PDB entry 8WWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	35	Right-handed alpha
Helix 2	AA2	A	35	48	Right-handed alpha
Helix 3	AA3	A	56	65	Right-handed alpha
Helix 4	AA4	A	68	91	Right-handed alpha
Helix 5	AA5	A	124	142	Right-handed alpha
Helix 6	AA6	A	159	170	Right-handed alpha
Helix 7	AA7	A	178	188	Right-handed alpha
Helix 8	AA8	A	204	216	Right-handed alpha
Helix 9	AA9	A	238	248	Right-handed alpha
Helix 10	AB1	A	264	281	Right-handed alpha
Helix 11	AB2	A	283	297	Right-handed alpha
Helix 12	AB3	A	305	317	Right-handed alpha
Helix 13	AB4	A	327	335	Right-handed alpha
Helix 14	AB5	A	375	378	Right-handed 310
Helix 15	AB6	A	394	404	Right-handed alpha
Helix 16	AB7	B	19	35	Right-handed alpha
Helix 17	AB8	B	35	48	Right-handed alpha
Helix 18	AB9	B	56	66	Right-handed alpha
Helix 19	AC1	B	68	92	Right-handed alpha
Helix 20	AC2	B	124	142	Right-handed alpha
Helix 21	AC3	B	159	170	Right-handed alpha
Helix 22	AC4	B	178	188	Right-handed alpha
Helix 23	AC5	B	204	216	Right-handed alpha
Helix 24	AC6	B	238	248	Right-handed alpha
Helix 25	AC7	B	249	251	Right-handed 310
Helix 26	AC8	B	264	281	Right-handed alpha
Helix 27	AC9	B	283	297	Right-handed alpha
Helix 28	AD1	B	305	317	Right-handed alpha
Helix 29	AD2	B	327	335	Right-handed alpha
Helix 30	AD3	B	375	378	Right-handed 310
Helix 31	AD4	B	394	404	Right-handed alpha
Helix 32	AD5	C	19	35	Right-handed alpha
Helix 33	AD6	C	35	48	Right-handed alpha
Helix 34	AD7	C	56	66	Right-handed alpha
Helix 35	AD8	C	68	92	Right-handed alpha
Helix 36	AD9	C	124	142	Right-handed alpha
Helix 37	AE1	C	159	170	Right-handed alpha
Helix 38	AE2	C	178	188	Right-handed alpha
Helix 39	AE3	C	204	216	Right-handed alpha
Helix 40	AE4	C	238	249	Right-handed alpha
Helix 41	AE5	C	264	280	Right-handed alpha
Helix 42	AE6	C	286	297	Right-handed alpha
Helix 43	AE7	C	305	317	Right-handed alpha
Helix 44	AE8	C	327	335	Right-handed alpha
Helix 45	AE9	C	375	378	Right-handed 310
Helix 46	AF1	C	394	405	Right-handed alpha
Helix 47	AF2	D	19	35	Right-handed alpha
Helix 48	AF3	D	35	48	Right-handed alpha
Helix 49	AF4	D	56	66	Right-handed alpha
Helix 50	AF5	D	68	92	Right-handed alpha
Helix 51	AF6	D	124	142	Right-handed alpha
Helix 52	AF7	D	159	170	Right-handed alpha
Helix 53	AF8	D	178	188	Right-handed alpha
Helix 54	AF9	D	189	193	Right-handed 310
Helix 55	AG1	D	204	216	Right-handed alpha
Helix 56	AG2	D	238	248	Right-handed alpha
Helix 57	AG3	D	264	280	Right-handed alpha
Helix 58	AG4	D	283	297	Right-handed alpha
Helix 59	AG5	D	305	317	Right-handed alpha
Helix 60	AG6	D	327	335	Right-handed alpha
Helix 61	AG7	D	375	378	Right-handed 310
Helix 62	AG8	D	394	404	Right-handed alpha

There are 8 sheets in PDB entry 8WWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	298	302	anti-parallel
Strand 3	B	258	262	parallel
Strand 4	B	229	233	parallel
Strand 5	B	320	324	parallel
Strand 6	B	340	343	parallel
Strand 7	B	380	387	parallel
Strand 8	B	104	112	anti-parallel
Strand 9	B	96	101	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	104	112	anti-parallel
Strand 3	A	380	387	anti-parallel
Strand 4	A	340	343	parallel
Strand 5	A	320	324	parallel
Strand 6	A	229	233	parallel
Strand 7	A	258	262	parallel
Strand 8	A	298	302	parallel
Strand 9	B	4	7	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	145	150	parallel
Strand 3	A	115	119	parallel
Strand 4	A	198	200	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	145	150	parallel
Strand 3	B	115	119	parallel
Strand 4	B	198	200	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	258	262	parallel
Strand 4	D	229	233	parallel
Strand 5	D	320	324	parallel
Strand 6	D	340	343	parallel
Strand 7	D	380	388	parallel
Strand 8	D	104	112	anti-parallel
Strand 9	D	96	101	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	101	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	380	387	anti-parallel
Strand 4	C	340	343	parallel
Strand 5	C	320	324	parallel
Strand 6	C	229	233	parallel
Strand 7	C	258	262	parallel
Strand 8	C	298	302	parallel
Strand 9	D	4	7	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	145	150	parallel
Strand 3	C	115	119	parallel
Strand 4	C	198	200	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	176	first strand
Strand 2	D	145	150	parallel
Strand 3	D	115	119	parallel
Strand 4	D	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWE