Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WWF entry

There are 4 chains in PDB entry 8WWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5LYS 253
B
 GLY 5LYS 253
C
 GLY 5LYS 253
D
 MET 1LYS 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 8WWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
22 35Right-handed alpha
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
106 118Right-handed alpha
Helix 7
AA7
A
118 136Right-handed alpha
Helix 8
AA8
A
145 149Right-handed 310
Helix 9
AA9
A
155 177Right-handed alpha
Helix 10
AB1
A
196 202Right-handed alpha
Helix 11
AB2
A
202 213Right-handed alpha
Helix 12
AB3
A
220 223Right-handed 310
Helix 13
AB4
A
224 232Right-handed alpha
Helix 14
AB5
A
233 237Right-handed 310
Helix 15
AB6
A
249 253Right-handed 310
Helix 16
AB7
B
5 9Right-handed 310
Helix 17
AB8
B
22 35Right-handed alpha
Helix 18
AB9
B
45 57Right-handed alpha
Helix 19
AC1
B
72 82Right-handed alpha
Helix 20
AC2
B
101 105Right-handed 310
Helix 21
AC3
B
106 118Right-handed alpha
Helix 22
AC4
B
118 136Right-handed alpha
Helix 23
AC5
B
145 149Right-handed 310
Helix 24
AC6
B
155 177Right-handed alpha
Helix 25
AC7
B
193 195Right-handed 310
Helix 26
AC8
B
196 202Right-handed alpha
Helix 27
AC9
B
202 213Right-handed alpha
Helix 28
AD1
B
220 223Right-handed 310
Helix 29
AD2
B
224 232Right-handed alpha
Helix 30
AD3
B
233 237Right-handed 310
Helix 31
AD4
B
249 253Right-handed 310
Helix 32
AD5
C
22 35Right-handed alpha
Helix 33
AD6
C
45 57Right-handed alpha
Helix 34
AD7
C
72 82Right-handed alpha
Helix 35
AD8
C
101 105Right-handed 310
Helix 36
AD9
C
106 118Right-handed alpha
Helix 37
AE1
C
118 136Right-handed alpha
Helix 38
AE2
C
145 149Right-handed 310
Helix 39
AE3
C
155 177Right-handed alpha
Helix 40
AE4
C
193 195Right-handed 310
Helix 41
AE5
C
196 202Right-handed alpha
Helix 42
AE6
C
202 213Right-handed alpha
Helix 43
AE7
C
220 223Right-handed 310
Helix 44
AE8
C
224 232Right-handed alpha
Helix 45
AE9
C
233 237Right-handed 310
Helix 46
AF1
C
249 253Right-handed 310
Helix 47
AF2
D
2 9Right-handed 310
Helix 48
AF3
D
22 35Right-handed alpha
Helix 49
AF4
D
45 57Right-handed alpha
Helix 50
AF5
D
72 82Right-handed alpha
Helix 51
AF6
D
101 105Right-handed 310
Helix 52
AF7
D
106 118Right-handed alpha
Helix 53
AF8
D
118 136Right-handed alpha
Helix 54
AF9
D
145 149Right-handed 310
Helix 55
AG1
D
155 177Right-handed alpha
Helix 56
AG2
D
193 195Right-handed 310
Helix 57
AG3
D
196 202Right-handed alpha
Helix 58
AG4
D
202 213Right-handed alpha
Helix 59
AG5
D
220 223Right-handed 310
Helix 60
AG6
D
224 232Right-handed alpha
Helix 61
AG7
D
233 237Right-handed 310
Helix 62
AG8
D
249 253Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8WWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
38 43parallel
Strand 3
A
14 18parallel
Strand 4
A
89 92parallel
Strand 5
A
138 143parallel
Strand 6
A
181 188parallel
Strand 7
A
243 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
38 43parallel
Strand 3
B
14 18parallel
Strand 4
B
89 92parallel
Strand 5
B
138 143parallel
Strand 6
B
181 188parallel
Strand 7
B
243 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 64first strand
Strand 2
C
38 43parallel
Strand 3
C
14 18parallel
Strand 4
C
89 92parallel
Strand 5
C
138 143parallel
Strand 6
C
181 188parallel
Strand 7
C
243 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 64first strand
Strand 2
D
38 43parallel
Strand 3
D
14 18parallel
Strand 4
D
89 92parallel
Strand 5
D
138 143parallel
Strand 6
D
181 188parallel
Strand 7
D
243 246parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il