Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WWO entry

There are 4 chains in PDB entry 8WWO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 403
B	MET 1	SER 403
C	MET 1	SER 403
D	MET 1	SER 403

There are 46 helices in PDB entry 8WWO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	16	Right-handed alpha
Helix 2	AA2	A	51	72	Right-handed alpha
Helix 3	AA3	A	105	113	Right-handed alpha
Helix 4	AA4	A	117	125	Right-handed alpha
Helix 5	AA5	A	146	154	Right-handed alpha
Helix 6	AA6	A	211	233	Right-handed alpha
Helix 7	AA7	A	250	260	Right-handed alpha
Helix 8	AA8	A	279	283	Right-handed 310
Helix 9	AA9	A	312	335	Right-handed alpha
Helix 10	AB1	A	375	381	Right-handed alpha
Helix 11	AB2	A	385	403	Right-handed alpha
Helix 12	AB3	B	8	16	Right-handed alpha
Helix 13	AB4	B	51	73	Right-handed alpha
Helix 14	AB5	B	105	113	Right-handed alpha
Helix 15	AB6	B	117	125	Right-handed alpha
Helix 16	AB7	B	146	154	Right-handed alpha
Helix 17	AB8	B	211	233	Right-handed alpha
Helix 18	AB9	B	250	260	Right-handed alpha
Helix 19	AC1	B	279	283	Right-handed 310
Helix 20	AC2	B	312	335	Right-handed alpha
Helix 21	AC3	B	342	348	Right-handed alpha
Helix 22	AC4	B	375	381	Right-handed alpha
Helix 23	AC5	B	385	403	Right-handed alpha
Helix 24	AC6	C	8	16	Right-handed alpha
Helix 25	AC7	C	51	73	Right-handed alpha
Helix 26	AC8	C	105	113	Right-handed alpha
Helix 27	AC9	C	117	125	Right-handed alpha
Helix 28	AD1	C	146	154	Right-handed alpha
Helix 29	AD2	C	211	233	Right-handed alpha
Helix 30	AD3	C	250	260	Right-handed alpha
Helix 31	AD4	C	279	283	Right-handed 310
Helix 32	AD5	C	312	335	Right-handed alpha
Helix 33	AD6	C	342	348	Right-handed alpha
Helix 34	AD7	C	375	381	Right-handed alpha
Helix 35	AD8	C	385	403	Right-handed alpha
Helix 36	AD9	D	8	16	Right-handed alpha
Helix 37	AE1	D	51	73	Right-handed alpha
Helix 38	AE2	D	105	113	Right-handed alpha
Helix 39	AE3	D	117	125	Right-handed alpha
Helix 40	AE4	D	146	154	Right-handed alpha
Helix 41	AE5	D	211	233	Right-handed alpha
Helix 42	AE6	D	250	260	Right-handed alpha
Helix 43	AE7	D	279	283	Right-handed 310
Helix 44	AE8	D	312	335	Right-handed alpha
Helix 45	AE9	D	375	381	Right-handed alpha
Helix 46	AF1	D	385	403	Right-handed alpha

There are 22 sheets in PDB entry 8WWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	37	first strand
Strand 2	A	40	45	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	184	187	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	155	164	anti-parallel
Strand 4	A	191	199	anti-parallel
Strand 5	A	90	96	anti-parallel
Strand 6	A	81	87	anti-parallel
Strand 7	A	238	241	parallel
Strand 8	A	244	245	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	304	first strand
Strand 2	A	350	356	parallel
Strand 3	A	285	291	anti-parallel
Strand 4	A	269	275	anti-parallel
Strand 5	A	382	383	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	371	372	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	C	128	129	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	40	45	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	167	174	anti-parallel
Strand 3	B	184	187	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	167	174	anti-parallel
Strand 3	B	155	164	anti-parallel
Strand 4	B	191	199	anti-parallel
Strand 5	B	90	95	anti-parallel
Strand 6	B	81	87	anti-parallel
Strand 7	B	238	241	parallel
Strand 8	B	244	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	C	5	6	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	304	first strand
Strand 2	B	350	356	parallel
Strand 3	B	285	291	anti-parallel
Strand 4	B	269	275	anti-parallel
Strand 5	B	382	383	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	371	372	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	40	45	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	C	184	187	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	C	155	163	anti-parallel
Strand 4	C	192	199	anti-parallel
Strand 5	C	90	96	anti-parallel
Strand 6	C	81	87	anti-parallel
Strand 7	C	238	241	parallel
Strand 8	C	244	245	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	304	first strand
Strand 2	C	350	356	parallel
Strand 3	C	285	291	anti-parallel
Strand 4	C	269	275	anti-parallel
Strand 5	C	382	383	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	371	372	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	40	45	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	167	174	anti-parallel
Strand 3	D	184	187	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	167	174	anti-parallel
Strand 3	D	155	164	anti-parallel
Strand 4	D	191	199	anti-parallel
Strand 5	D	90	96	anti-parallel
Strand 6	D	81	87	anti-parallel
Strand 7	D	238	241	parallel
Strand 8	D	244	245	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	304	first strand
Strand 2	D	350	356	parallel
Strand 3	D	285	291	anti-parallel
Strand 4	D	269	275	anti-parallel
Strand 5	D	382	383	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	371	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WWO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWO