Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WWP entry

There are 3 chains in PDB entry 8WWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	VAL 597
B	ALA 15	ARG 596
C	ALA 15	THR 598

There are 54 helices in PDB entry 8WWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	97	109	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	138	154	Right-handed alpha
Helix 5	AA5	A	178	183	Right-handed alpha
Helix 6	AA6	A	212	219	Right-handed alpha
Helix 7	AA7	A	225	236	Right-handed alpha
Helix 8	AA8	A	236	250	Right-handed alpha
Helix 9	AA9	A	273	282	Right-handed alpha
Helix 10	AB1	A	301	313	Right-handed alpha
Helix 11	AB2	A	320	344	Right-handed alpha
Helix 12	AB3	A	389	393	Right-handed 310
Helix 13	AB4	A	414	418	Right-handed 310
Helix 14	AB5	A	428	443	Right-handed alpha
Helix 15	AB6	A	444	446	Right-handed 310
Helix 16	AB7	A	469	485	Right-handed alpha
Helix 17	AB8	A	525	532	Right-handed alpha
Helix 18	AB9	A	558	581	Right-handed alpha
Helix 19	AC1	B	78	82	Right-handed 310
Helix 20	AC2	B	97	109	Right-handed alpha
Helix 21	AC3	B	111	115	Right-handed 310
Helix 22	AC4	B	138	154	Right-handed alpha
Helix 23	AC5	B	178	183	Right-handed alpha
Helix 24	AC6	B	212	219	Right-handed alpha
Helix 25	AC7	B	225	236	Right-handed alpha
Helix 26	AC8	B	236	250	Right-handed alpha
Helix 27	AC9	B	273	282	Right-handed alpha
Helix 28	AD1	B	301	313	Right-handed alpha
Helix 29	AD2	B	320	344	Right-handed alpha
Helix 30	AD3	B	389	393	Right-handed 310
Helix 31	AD4	B	414	418	Right-handed 310
Helix 32	AD5	B	428	443	Right-handed alpha
Helix 33	AD6	B	444	446	Right-handed 310
Helix 34	AD7	B	469	485	Right-handed alpha
Helix 35	AD8	B	525	532	Right-handed alpha
Helix 36	AD9	B	558	581	Right-handed alpha
Helix 37	AE1	C	78	82	Right-handed 310
Helix 38	AE2	C	97	109	Right-handed alpha
Helix 39	AE3	C	111	115	Right-handed 310
Helix 40	AE4	C	138	154	Right-handed alpha
Helix 41	AE5	C	178	183	Right-handed alpha
Helix 42	AE6	C	212	219	Right-handed alpha
Helix 43	AE7	C	225	236	Right-handed alpha
Helix 44	AE8	C	236	250	Right-handed alpha
Helix 45	AE9	C	273	282	Right-handed alpha
Helix 46	AF1	C	301	313	Right-handed alpha
Helix 47	AF2	C	320	344	Right-handed alpha
Helix 48	AF3	C	389	393	Right-handed 310
Helix 49	AF4	C	414	418	Right-handed 310
Helix 50	AF5	C	428	443	Right-handed alpha
Helix 51	AF6	C	444	446	Right-handed 310
Helix 52	AF7	C	469	485	Right-handed alpha
Helix 53	AF8	C	525	532	Right-handed alpha
Helix 54	AF9	C	558	581	Right-handed alpha

There are 12 sheets in PDB entry 8WWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	40	46	anti-parallel
Strand 4	A	50	58	anti-parallel
Strand 5	A	123	131	anti-parallel
Strand 6	A	71	76	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	187	195	anti-parallel
Strand 4	A	200	208	anti-parallel
Strand 5	A	545	552	anti-parallel
Strand 6	A	534	540	anti-parallel
Strand 7	A	493	506	anti-parallel
Strand 8	A	513	522	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	379	388	anti-parallel
Strand 4	A	455	464	anti-parallel
Strand 5	A	407	412	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	404	405	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	24	30	anti-parallel
Strand 3	B	40	46	anti-parallel
Strand 4	B	50	58	anti-parallel
Strand 5	B	123	131	anti-parallel
Strand 6	B	71	76	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	187	195	anti-parallel
Strand 4	B	200	208	anti-parallel
Strand 5	B	545	552	anti-parallel
Strand 6	B	534	540	anti-parallel
Strand 7	B	493	506	anti-parallel
Strand 8	B	513	522	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	379	388	anti-parallel
Strand 4	B	455	464	anti-parallel
Strand 5	B	407	412	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	404	405	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	24	30	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	50	58	anti-parallel
Strand 5	C	123	131	anti-parallel
Strand 6	C	71	76	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	200	208	anti-parallel
Strand 5	C	545	552	anti-parallel
Strand 6	C	534	540	anti-parallel
Strand 7	C	493	506	anti-parallel
Strand 8	C	513	522	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	362	first strand
Strand 2	C	370	376	anti-parallel
Strand 3	C	379	388	anti-parallel
Strand 4	C	455	464	anti-parallel
Strand 5	C	407	412	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	404	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWP