Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WWS entry

There are 4 chains in PDB entry 8WWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41ALA 274
B
 GLY 41ALA 274
C
 GLY 41ALA 274
D
 GLY 41GLY 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8WWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 71Right-handed alpha
Helix 2
AA2
A
76 98Right-handed alpha
Helix 3
AA3
A
104 118Right-handed alpha
Helix 4
AA4
A
119 120Right-handed 310
Helix 5
AA5
A
121 126Right-handed 310
Helix 6
AA6
A
127 136Right-handed alpha
Helix 7
AA7
A
137 140Right-handed 310
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
167 179Right-handed alpha
Helix 10
AB1
A
189 192Right-handed 310
Helix 11
AB2
A
197 209Right-handed alpha
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
221 231Right-handed alpha
Helix 14
AB5
A
264 272Right-handed alpha
Helix 15
AB6
B
56 72Right-handed alpha
Helix 16
AB7
B
76 97Right-handed alpha
Helix 17
AB8
B
104 118Right-handed alpha
Helix 18
AB9
B
127 136Right-handed alpha
Helix 19
AC1
B
137 140Right-handed 310
Helix 20
AC2
B
146 155Right-handed alpha
Helix 21
AC3
B
167 178Right-handed alpha
Helix 22
AC4
B
187 192Right-handed 310
Helix 23
AC5
B
197 209Right-handed alpha
Helix 24
AC6
B
211 213Right-handed 310
Helix 25
AC7
B
221 231Right-handed alpha
Helix 26
AC8
B
264 272Right-handed alpha
Helix 27
AC9
C
56 72Right-handed alpha
Helix 28
AD1
C
76 97Right-handed alpha
Helix 29
AD2
C
104 117Right-handed alpha
Helix 30
AD3
C
127 136Right-handed alpha
Helix 31
AD4
C
137 140Right-handed 310
Helix 32
AD5
C
146 158Right-handed alpha
Helix 33
AD6
C
167 178Right-handed alpha
Helix 34
AD7
C
189 192Right-handed 310
Helix 35
AD8
C
197 209Right-handed alpha
Helix 36
AD9
C
211 213Right-handed 310
Helix 37
AE1
C
221 231Right-handed alpha
Helix 38
AE2
C
264 272Right-handed alpha
Helix 39
AE3
D
56 70Right-handed alpha
Helix 40
AE4
D
76 97Right-handed alpha
Helix 41
AE5
D
104 118Right-handed alpha
Helix 42
AE6
D
120 125Right-handed alpha
Helix 43
AE7
D
127 136Right-handed alpha
Helix 44
AE8
D
137 140Right-handed 310
Helix 45
AE9
D
146 156Right-handed alpha
Helix 46
AF1
D
167 178Right-handed alpha
Helix 47
AF2
D
187 192Right-handed 310
Helix 48
AF3
D
197 209Right-handed alpha
Helix 49
AF4
D
211 213Right-handed 310
Helix 50
AF5
D
221 230Right-handed alpha
Helix 51
AF6
D
264 272Right-handed alpha
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There are 8 sheets in PDB entry 8WWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
159 164parallel
Strand 3
A
44 47parallel
Strand 4
A
215 219parallel
Strand 5
A
234 238parallel
Strand 6
A
260 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
142 143anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
44 47parallel
Strand 3
B
215 219parallel
Strand 4
B
234 238parallel
Strand 5
B
260 262parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
142 143anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 187first strand
Strand 2
C
159 164parallel
Strand 3
C
44 47parallel
Strand 4
C
215 219parallel
Strand 5
C
234 238parallel
Strand 6
C
260 262parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
142 143anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 162first strand
Strand 2
D
44 47parallel
Strand 3
D
215 219parallel
Strand 4
D
234 238parallel
Strand 5
D
260 262parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
142 143anti-parallel
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