Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WWW entry

There are 2 chains in PDB entry 8WWW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	VAL 508
B	VAL 8	VAL 508

There are 40 helices in PDB entry 8WWW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	37	54	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	94	106	Right-handed alpha
Helix 5	AA5	A	117	122	Right-handed alpha
Helix 6	AA6	A	134	142	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	181	196	Right-handed alpha
Helix 9	AA9	A	213	225	Right-handed alpha
Helix 10	AB1	A	233	237	Right-handed 310
Helix 11	AB2	A	238	249	Right-handed alpha
Helix 12	AB3	A	257	268	Right-handed alpha
Helix 13	AB4	A	269	273	Right-handed 310
Helix 14	AB5	A	285	295	Right-handed alpha
Helix 15	AB6	A	305	309	Right-handed 310
Helix 16	AB7	A	319	323	Right-handed 310
Helix 17	AB8	A	367	374	Right-handed alpha
Helix 18	AB9	A	420	429	Right-handed alpha
Helix 19	AC1	A	466	474	Right-handed alpha
Helix 20	AC2	A	477	481	Right-handed 310
Helix 21	AC3	A	500	504	Right-handed 310
Helix 22	AC4	B	9	22	Right-handed alpha
Helix 23	AC5	B	37	54	Right-handed alpha
Helix 24	AC6	B	69	83	Right-handed alpha
Helix 25	AC7	B	94	106	Right-handed alpha
Helix 26	AC8	B	117	121	Right-handed 310
Helix 27	AC9	B	132	141	Right-handed alpha
Helix 28	AD1	B	181	196	Right-handed alpha
Helix 29	AD2	B	213	225	Right-handed alpha
Helix 30	AD3	B	238	249	Right-handed alpha
Helix 31	AD4	B	257	268	Right-handed alpha
Helix 32	AD5	B	269	273	Right-handed 310
Helix 33	AD6	B	285	295	Right-handed alpha
Helix 34	AD7	B	305	309	Right-handed 310
Helix 35	AD8	B	319	323	Right-handed 310
Helix 36	AD9	B	367	374	Right-handed alpha
Helix 37	AE1	B	420	430	Right-handed alpha
Helix 38	AE2	B	464	476	Right-handed alpha
Helix 39	AE3	B	477	481	Right-handed 310
Helix 40	AE4	B	500	504	Right-handed 310

There are 12 sheets in PDB entry 8WWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	227	230	parallel
Strand 4	A	202	205	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	61	65	parallel
Strand 3	A	109	112	parallel
Strand 4	A	126	129	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	176	180	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	276	280	parallel
Strand 3	A	298	303	parallel
Strand 4	A	313	316	anti-parallel
Strand 5	A	325	329	anti-parallel
Strand 6	A	402	407	anti-parallel
Strand 7	A	386	396	anti-parallel
Strand 8	A	351	357	anti-parallel
Strand 9	A	333	338	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	276	280	parallel
Strand 3	A	298	303	parallel
Strand 4	A	313	316	anti-parallel
Strand 5	A	325	329	anti-parallel
Strand 6	A	402	407	anti-parallel
Strand 7	A	386	396	anti-parallel
Strand 8	A	375	377	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	443	first strand
Strand 2	A	449	457	anti-parallel
Strand 3	A	484	487	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	26	30	anti-parallel
Strand 3	B	227	230	parallel
Strand 4	B	202	205	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	61	65	parallel
Strand 3	B	109	112	parallel
Strand 4	B	127	129	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	175	180	anti-parallel
Strand 3	B	363	364	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	276	280	parallel
Strand 3	B	298	303	parallel
Strand 4	B	313	315	anti-parallel
Strand 5	B	325	329	anti-parallel
Strand 6	B	402	407	anti-parallel
Strand 7	B	386	396	anti-parallel
Strand 8	B	351	357	anti-parallel
Strand 9	B	333	338	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	276	280	parallel
Strand 3	B	298	303	parallel
Strand 4	B	313	315	anti-parallel
Strand 5	B	325	329	anti-parallel
Strand 6	B	402	407	anti-parallel
Strand 7	B	386	396	anti-parallel
Strand 8	B	375	377	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	442	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	484	488	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WWW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WWW