Analysis of interatomic Contacts of Structural Units in PDB entry:
8WX0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WX0 entry

There are 7 chains in PDB entry 8WX0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 597
B	GLU 5	ARG 596
C	ILE 6	THR 598
E	C 1	U 6
F	U 1	U 3
G	U 1	U 3
D	U 1	U 3

There are 55 helices in PDB entry 8WX0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	83	Right-handed 310
Helix 2	AA2	A	97	115	Right-handed alpha
Helix 3	AA3	A	138	153	Right-handed alpha
Helix 4	AA4	A	178	185	Right-handed alpha
Helix 5	AA5	A	212	219	Right-handed alpha
Helix 6	AA6	A	225	236	Right-handed alpha
Helix 7	AA7	A	236	249	Right-handed alpha
Helix 8	AA8	A	273	282	Right-handed alpha
Helix 9	AA9	A	283	289	Right-handed alpha
Helix 10	AB1	A	294	314	Right-handed alpha
Helix 11	AB2	A	320	344	Right-handed alpha
Helix 12	AB3	A	391	393	Right-handed 310
Helix 13	AB4	A	414	418	Right-handed 310
Helix 14	AB5	A	428	443	Right-handed alpha
Helix 15	AB6	A	444	446	Right-handed 310
Helix 16	AB7	A	469	485	Right-handed alpha
Helix 17	AB8	A	527	532	Right-handed alpha
Helix 18	AB9	A	558	584	Right-handed alpha
Helix 19	AC1	B	78	83	Right-handed 310
Helix 20	AC2	B	98	112	Right-handed alpha
Helix 21	AC3	B	138	154	Right-handed alpha
Helix 22	AC4	B	178	184	Right-handed alpha
Helix 23	AC5	B	212	220	Right-handed alpha
Helix 24	AC6	B	225	234	Right-handed alpha
Helix 25	AC7	B	236	246	Right-handed alpha
Helix 26	AC8	B	253	258	Right-handed alpha
Helix 27	AC9	B	272	281	Right-handed alpha
Helix 28	AD1	B	282	287	Right-handed 310
Helix 29	AD2	B	298	314	Right-handed alpha
Helix 30	AD3	B	320	343	Right-handed alpha
Helix 31	AD4	B	389	393	Right-handed 310
Helix 32	AD5	B	414	418	Right-handed 310
Helix 33	AD6	B	428	443	Right-handed alpha
Helix 34	AD7	B	444	446	Right-handed 310
Helix 35	AD8	B	469	485	Right-handed alpha
Helix 36	AD9	B	558	584	Right-handed alpha
Helix 37	AE1	C	19	23	Right-handed 310
Helix 38	AE2	C	78	83	Right-handed 310
Helix 39	AE3	C	97	112	Right-handed alpha
Helix 40	AE4	C	138	153	Right-handed alpha
Helix 41	AE5	C	178	183	Right-handed alpha
Helix 42	AE6	C	212	218	Right-handed alpha
Helix 43	AE7	C	225	236	Right-handed alpha
Helix 44	AE8	C	236	249	Right-handed alpha
Helix 45	AE9	C	273	282	Right-handed alpha
Helix 46	AF1	C	283	291	Right-handed alpha
Helix 47	AF2	C	297	314	Right-handed alpha
Helix 48	AF3	C	320	342	Right-handed alpha
Helix 49	AF4	C	389	393	Right-handed 310
Helix 50	AF5	C	414	418	Right-handed 310
Helix 51	AF6	C	428	443	Right-handed alpha
Helix 52	AF7	C	444	446	Right-handed 310
Helix 53	AF8	C	469	485	Right-handed alpha
Helix 54	AF9	C	525	532	Right-handed alpha
Helix 55	AG1	C	558	584	Right-handed alpha

There are 10 sheets in PDB entry 8WX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	17	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	40	46	anti-parallel
Strand 4	A	50	58	anti-parallel
Strand 5	A	123	129	anti-parallel
Strand 6	A	71	76	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	187	195	anti-parallel
Strand 4	A	200	208	anti-parallel
Strand 5	A	545	552	anti-parallel
Strand 6	A	534	541	anti-parallel
Strand 7	A	492	506	anti-parallel
Strand 8	A	513	521	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	379	389	anti-parallel
Strand 4	A	454	464	anti-parallel
Strand 5	A	407	412	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	18	first strand
Strand 2	B	24	31	anti-parallel
Strand 3	B	40	46	anti-parallel
Strand 4	B	50	58	anti-parallel
Strand 5	B	123	128	anti-parallel
Strand 6	B	71	76	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	200	208	anti-parallel
Strand 5	B	545	552	anti-parallel
Strand 6	B	534	540	anti-parallel
Strand 7	B	493	506	anti-parallel
Strand 8	B	513	522	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	379	388	anti-parallel
Strand 4	B	455	464	anti-parallel
Strand 5	B	407	412	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	C	25	31	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	50	58	anti-parallel
Strand 5	C	123	131	anti-parallel
Strand 6	C	71	76	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	163	169	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	200	209	anti-parallel
Strand 5	C	545	551	anti-parallel
Strand 6	C	535	540	anti-parallel
Strand 7	C	493	496	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	362	first strand
Strand 2	C	370	376	anti-parallel
Strand 3	C	379	388	anti-parallel
Strand 4	C	455	464	anti-parallel
Strand 5	C	407	412	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	506	first strand
Strand 2	C	513	520	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WX0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WX0