Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WXD entry

There are 2 chains in PDB entry 8WXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29THR 447
B
 THR 29THR 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8WXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 77Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
93 104Right-handed alpha
Helix 4
AA4
A
105 107Right-handed 310
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
245 248Right-handed 310
Helix 8
AA8
A
263 267Right-handed 310
Helix 9
AA9
B
69 77Right-handed alpha
Helix 10
AB1
B
78 87Right-handed alpha
Helix 11
AB2
B
93 104Right-handed alpha
Helix 12
AB3
B
105 107Right-handed 310
Helix 13
AB4
B
108 110Right-handed 310
Helix 14
AB5
B
206 210Right-handed 310
Helix 15
AB6
B
245 248Right-handed 310
Helix 16
AB7
B
263 267Right-handed 310
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There are 18 sheets in PDB entry 8WXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 127first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
160 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
42 53anti-parallel
Strand 3
A
112 116anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
42 53anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
153 156anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
275 284anti-parallel
Strand 5
A
225 227anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
275 284anti-parallel
Strand 5
A
232 236anti-parallel
Strand 6
A
241 243anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
320 325parallel
Strand 3
A
295 304anti-parallel
Strand 4
A
215 220anti-parallel
Strand 5
A
256 259anti-parallel
Strand 6
A
250 253anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
320 325parallel
Strand 3
A
295 304anti-parallel
Strand 4
A
314 316anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 375first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
431 438parallel
Strand 4
A
424 426anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 362first strand
Strand 2
A
345 351anti-parallel
Strand 3
A
378 386anti-parallel
Strand 4
A
397 405anti-parallel
Strand 5
A
411 417anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 127first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
161 163parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
42 53anti-parallel
Strand 3
B
112 116anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
42 53anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
153 156anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
170 176anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
275 284anti-parallel
Strand 5
B
225 227anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
170 176anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
275 284anti-parallel
Strand 5
B
232 236anti-parallel
Strand 6
B
241 243anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
320 325parallel
Strand 3
B
295 304anti-parallel
Strand 4
B
215 220anti-parallel
Strand 5
B
256 259anti-parallel
Strand 6
B
250 253anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
320 325parallel
Strand 3
B
295 304anti-parallel
Strand 4
B
314 316anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 375first strand
Strand 2
B
327 335anti-parallel
Strand 3
B
431 438parallel
Strand 4
B
424 426anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 362first strand
Strand 2
B
345 351anti-parallel
Strand 3
B
378 386anti-parallel
Strand 4
B
397 405anti-parallel
Strand 5
B
411 417anti-parallel
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