Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WXE entry

There are 8 chains in PDB entry 8WXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 LEU 27LYS 54
b
 LEU 27LYS 54
d
 PHE 22ALA 126
e
 GLN 33LYS 153
f
 GLN 33ASN 154
g
 LYS 26ASP 140
m
 THR 256PHE 289
n
 THR 252THR 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8WXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
27 54Right-handed alpha
Helix 2
AA2
b
28 54Right-handed alpha
Helix 3
AA3
d
100 125Right-handed alpha
Helix 4
AA4
e
126 152Right-handed alpha
Helix 5
AA5
f
128 153Right-handed alpha
Helix 6
AA6
g
111 140Right-handed alpha
Helix 7
AA7
m
258 288Right-handed alpha
Helix 8
AA8
n
253 288Right-handed alpha
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There are 9 sheets in PDB entry 8WXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
33 36first strand
Strand 2
d
57 61anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
41 46first strand
Strand 2
d
68 73anti-parallel
Strand 3
d
84 90anti-parallel
Strand 4
e
110 115parallel
Strand 5
e
95 99anti-parallel
Strand 6
e
58 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
96 98first strand
Strand 2
e
122 124anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
37 40first strand
Strand 2
e
45 48anti-parallel
Strand 3
e
81 84anti-parallel
Strand 4
e
76 77anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
45 47first strand
Strand 2
f
82 84anti-parallel
Strand 3
f
75 77anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
122 123first strand
Strand 2
g
108 109anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
31 34first strand
Strand 2
g
42 46anti-parallel
Strand 3
g
73 75anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
55 57first strand
Strand 2
g
60 63anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
84 85first strand
Strand 2
g
97 98anti-parallel
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