Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WXF entry

There are 3 chains in PDB entry 8WXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	ILE 733
B	ALA 4	ILE 733
C	ALA 4	ILE 733

There are 58 helices in PDB entry 8WXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	97	109	Right-handed alpha
Helix 3	AA3	A	139	153	Right-handed alpha
Helix 4	AA4	A	178	185	Right-handed alpha
Helix 5	AA5	A	212	221	Right-handed alpha
Helix 6	AA6	A	225	254	Right-handed alpha
Helix 7	AA7	A	271	282	Right-handed alpha
Helix 8	AA8	A	283	293	Right-handed alpha
Helix 9	AA9	A	297	313	Right-handed alpha
Helix 10	AB1	A	321	343	Right-handed alpha
Helix 11	AB2	A	414	419	Right-handed alpha
Helix 12	AB3	A	428	443	Right-handed alpha
Helix 13	AB4	A	469	485	Right-handed alpha
Helix 14	AB5	A	525	532	Right-handed alpha
Helix 15	AB6	A	561	584	Right-handed alpha
Helix 16	AB7	A	606	611	Right-handed alpha
Helix 17	AB8	A	617	626	Right-handed alpha
Helix 18	AB9	A	643	658	Right-handed alpha
Helix 19	AC1	A	694	700	Right-handed alpha
Helix 20	AC2	B	78	82	Right-handed 310
Helix 21	AC3	B	97	109	Right-handed alpha
Helix 22	AC4	B	139	153	Right-handed alpha
Helix 23	AC5	B	178	185	Right-handed alpha
Helix 24	AC6	B	212	219	Right-handed alpha
Helix 25	AC7	B	225	254	Right-handed alpha
Helix 26	AC8	B	271	282	Right-handed alpha
Helix 27	AC9	B	283	292	Right-handed alpha
Helix 28	AD1	B	297	314	Right-handed alpha
Helix 29	AD2	B	321	343	Right-handed alpha
Helix 30	AD3	B	428	443	Right-handed alpha
Helix 31	AD4	B	444	446	Right-handed 310
Helix 32	AD5	B	469	485	Right-handed alpha
Helix 33	AD6	B	525	531	Right-handed alpha
Helix 34	AD7	B	561	584	Right-handed alpha
Helix 35	AD8	B	606	611	Right-handed alpha
Helix 36	AD9	B	617	625	Right-handed alpha
Helix 37	AE1	B	643	659	Right-handed alpha
Helix 38	AE2	B	695	700	Right-handed 310
Helix 39	AE3	C	78	82	Right-handed 310
Helix 40	AE4	C	97	109	Right-handed alpha
Helix 41	AE5	C	110	112	Right-handed 310
Helix 42	AE6	C	139	153	Right-handed alpha
Helix 43	AE7	C	178	185	Right-handed alpha
Helix 44	AE8	C	212	219	Right-handed alpha
Helix 45	AE9	C	225	254	Right-handed alpha
Helix 46	AF1	C	271	282	Right-handed alpha
Helix 47	AF2	C	284	292	Right-handed alpha
Helix 48	AF3	C	297	317	Right-handed alpha
Helix 49	AF4	C	321	344	Right-handed alpha
Helix 50	AF5	C	414	418	Right-handed 310
Helix 51	AF6	C	428	443	Right-handed alpha
Helix 52	AF7	C	469	485	Right-handed alpha
Helix 53	AF8	C	525	531	Right-handed alpha
Helix 54	AF9	C	561	584	Right-handed alpha
Helix 55	AG1	C	603	611	Right-handed alpha
Helix 56	AG2	C	616	626	Right-handed alpha
Helix 57	AG3	C	643	658	Right-handed alpha
Helix 58	AG4	C	694	699	Right-handed alpha

There are 21 sheets in PDB entry 8WXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	30	31	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	25	28	anti-parallel
Strand 3	A	43	46	anti-parallel
Strand 4	A	50	58	anti-parallel
Strand 5	A	123	131	anti-parallel
Strand 6	A	71	76	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	188	196	anti-parallel
Strand 4	A	199	206	anti-parallel
Strand 5	A	549	550	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	380	388	anti-parallel
Strand 3	A	455	464	anti-parallel
Strand 4	A	407	411	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	539	540	anti-parallel
Strand 3	A	545	547	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	534	535	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	640	641	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	30	31	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	41	46	anti-parallel
Strand 3	B	50	58	anti-parallel
Strand 4	B	123	131	anti-parallel
Strand 5	B	71	76	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	199	206	anti-parallel
Strand 5	B	549	550	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	388	first strand
Strand 2	B	455	462	anti-parallel
Strand 3	B	408	409	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	520	521	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	540	first strand
Strand 2	B	545	547	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	10	12	anti-parallel
Strand 3	C	25	31	anti-parallel
Strand 4	C	15	17	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	10	12	anti-parallel
Strand 3	C	25	31	anti-parallel
Strand 4	C	42	46	anti-parallel
Strand 5	C	51	58	anti-parallel
Strand 6	C	123	131	anti-parallel
Strand 7	C	71	76	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	188	196	anti-parallel
Strand 4	C	199	206	anti-parallel
Strand 5	C	549	551	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	388	first strand
Strand 2	C	455	464	anti-parallel
Strand 3	C	407	409	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	500	first strand
Strand 2	C	519	521	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	540	first strand
Strand 2	C	545	547	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	631	first strand
Strand 2	C	637	639	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	724	first strand
Strand 2	C	730	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXF