Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WXK entry

There are 4 chains in PDB entry 8WXK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 332
B	LYS 5	GLN 332
C	GLY 4	GLN 332
D	GLY 4	GLN 332

There are 52 helices in PDB entry 8WXK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	42	49	Right-handed alpha
Helix 3	AA3	A	61	72	Right-handed alpha
Helix 4	AA4	A	85	92	Right-handed alpha
Helix 5	AA5	A	92	101	Right-handed alpha
Helix 6	AA6	A	101	114	Right-handed alpha
Helix 7	AA7	A	126	128	Right-handed 310
Helix 8	AA8	A	146	167	Right-handed alpha
Helix 9	AA9	A	196	206	Right-handed alpha
Helix 10	AB1	A	233	249	Right-handed alpha
Helix 11	AB2	A	266	278	Right-handed alpha
Helix 12	AB3	A	300	308	Right-handed alpha
Helix 13	AB4	A	315	331	Right-handed alpha
Helix 14	AB5	B	15	28	Right-handed alpha
Helix 15	AB6	B	42	49	Right-handed alpha
Helix 16	AB7	B	61	71	Right-handed alpha
Helix 17	AB8	B	85	92	Right-handed alpha
Helix 18	AB9	B	92	101	Right-handed alpha
Helix 19	AC1	B	101	114	Right-handed alpha
Helix 20	AC2	B	126	128	Right-handed 310
Helix 21	AC3	B	146	167	Right-handed alpha
Helix 22	AC4	B	196	206	Right-handed alpha
Helix 23	AC5	B	233	249	Right-handed alpha
Helix 24	AC6	B	266	278	Right-handed alpha
Helix 25	AC7	B	300	308	Right-handed alpha
Helix 26	AC8	B	315	331	Right-handed alpha
Helix 27	AC9	C	15	28	Right-handed alpha
Helix 28	AD1	C	42	49	Right-handed alpha
Helix 29	AD2	C	61	72	Right-handed alpha
Helix 30	AD3	C	85	92	Right-handed alpha
Helix 31	AD4	C	92	101	Right-handed alpha
Helix 32	AD5	C	101	114	Right-handed alpha
Helix 33	AD6	C	126	128	Right-handed 310
Helix 34	AD7	C	146	167	Right-handed alpha
Helix 35	AD8	C	196	206	Right-handed alpha
Helix 36	AD9	C	233	249	Right-handed alpha
Helix 37	AE1	C	266	278	Right-handed alpha
Helix 38	AE2	C	300	308	Right-handed alpha
Helix 39	AE3	C	315	331	Right-handed alpha
Helix 40	AE4	D	15	28	Right-handed alpha
Helix 41	AE5	D	42	49	Right-handed alpha
Helix 42	AE6	D	61	72	Right-handed alpha
Helix 43	AE7	D	85	92	Right-handed alpha
Helix 44	AE8	D	92	101	Right-handed alpha
Helix 45	AE9	D	101	114	Right-handed alpha
Helix 46	AF1	D	126	128	Right-handed 310
Helix 47	AF2	D	146	167	Right-handed alpha
Helix 48	AF3	D	196	206	Right-handed alpha
Helix 49	AF4	D	233	249	Right-handed alpha
Helix 50	AF5	D	266	278	Right-handed alpha
Helix 51	AF6	D	300	308	Right-handed alpha
Helix 52	AF7	D	315	331	Right-handed alpha

There are 16 sheets in PDB entry 8WXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	31	36	parallel
Strand 3	A	7	11	parallel
Strand 4	A	76	79	parallel
Strand 5	A	118	124	parallel
Strand 6	A	169	175	parallel
Strand 7	A	254	258	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	230	232	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	215	first strand
Strand 2	A	283	286	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	227	228	anti-parallel
Strand 3	A	295	296	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	31	36	parallel
Strand 3	B	7	11	parallel
Strand 4	B	76	79	parallel
Strand 5	B	118	124	parallel
Strand 6	B	169	175	parallel
Strand 7	B	254	258	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	230	232	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	215	first strand
Strand 2	B	283	286	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	227	228	anti-parallel
Strand 3	B	295	296	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	31	36	parallel
Strand 3	C	7	11	parallel
Strand 4	C	76	79	parallel
Strand 5	C	118	124	parallel
Strand 6	C	169	175	parallel
Strand 7	C	254	258	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	230	232	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	283	286	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	227	228	anti-parallel
Strand 3	C	295	296	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	31	35	parallel
Strand 3	D	7	11	parallel
Strand 4	D	76	79	parallel
Strand 5	D	118	124	parallel
Strand 6	D	169	175	parallel
Strand 7	D	254	258	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	230	232	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	215	first strand
Strand 2	D	283	286	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	227	228	anti-parallel
Strand 3	D	295	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WXK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WXK