Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WY4 entry

There are 4 chains in PDB entry 8WY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 575
B	MET 1	SER 575
D	MET 1	SER 575
C	MET 1	SER 575

There are 68 helices in PDB entry 8WY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	83	91	Right-handed alpha
Helix 4	AA4	A	295	308	Right-handed alpha
Helix 5	AA5	A	321	326	Right-handed 310
Helix 6	AA6	A	358	370	Right-handed alpha
Helix 7	AA7	A	380	395	Right-handed alpha
Helix 8	AA8	A	397	402	Right-handed alpha
Helix 9	AA9	A	413	423	Right-handed alpha
Helix 10	AB1	A	448	457	Right-handed alpha
Helix 11	AB2	A	476	493	Right-handed alpha
Helix 12	AB3	A	493	503	Right-handed alpha
Helix 13	AB4	A	512	528	Right-handed alpha
Helix 14	AB5	A	532	540	Right-handed alpha
Helix 15	AB6	A	540	551	Right-handed alpha
Helix 16	AB7	A	553	562	Right-handed alpha
Helix 17	AB8	A	567	574	Right-handed alpha
Helix 18	AB9	B	31	47	Right-handed alpha
Helix 19	AC1	B	47	52	Right-handed alpha
Helix 20	AC2	B	83	91	Right-handed alpha
Helix 21	AC3	B	295	308	Right-handed alpha
Helix 22	AC4	B	321	326	Right-handed 310
Helix 23	AC5	B	358	370	Right-handed alpha
Helix 24	AC6	B	380	395	Right-handed alpha
Helix 25	AC7	B	397	402	Right-handed alpha
Helix 26	AC8	B	413	423	Right-handed alpha
Helix 27	AC9	B	448	457	Right-handed alpha
Helix 28	AD1	B	476	493	Right-handed alpha
Helix 29	AD2	B	493	503	Right-handed alpha
Helix 30	AD3	B	512	528	Right-handed alpha
Helix 31	AD4	B	532	540	Right-handed alpha
Helix 32	AD5	B	540	551	Right-handed alpha
Helix 33	AD6	B	553	562	Right-handed alpha
Helix 34	AD7	B	567	574	Right-handed alpha
Helix 35	AD8	D	31	47	Right-handed alpha
Helix 36	AD9	D	47	52	Right-handed alpha
Helix 37	AE1	D	83	91	Right-handed alpha
Helix 38	AE2	D	295	308	Right-handed alpha
Helix 39	AE3	D	321	326	Right-handed 310
Helix 40	AE4	D	358	370	Right-handed alpha
Helix 41	AE5	D	380	395	Right-handed alpha
Helix 42	AE6	D	397	402	Right-handed alpha
Helix 43	AE7	D	413	423	Right-handed alpha
Helix 44	AE8	D	448	457	Right-handed alpha
Helix 45	AE9	D	476	493	Right-handed alpha
Helix 46	AF1	D	493	503	Right-handed alpha
Helix 47	AF2	D	512	528	Right-handed alpha
Helix 48	AF3	D	532	540	Right-handed alpha
Helix 49	AF4	D	540	551	Right-handed alpha
Helix 50	AF5	D	553	562	Right-handed alpha
Helix 51	AF6	D	567	574	Right-handed alpha
Helix 52	AF7	C	31	47	Right-handed alpha
Helix 53	AF8	C	47	52	Right-handed alpha
Helix 54	AF9	C	83	91	Right-handed alpha
Helix 55	AG1	C	295	308	Right-handed alpha
Helix 56	AG2	C	321	326	Right-handed 310
Helix 57	AG3	C	358	370	Right-handed alpha
Helix 58	AG4	C	380	395	Right-handed alpha
Helix 59	AG5	C	397	402	Right-handed alpha
Helix 60	AG6	C	413	423	Right-handed alpha
Helix 61	AG7	C	448	457	Right-handed alpha
Helix 62	AG8	C	476	493	Right-handed alpha
Helix 63	AG9	C	493	503	Right-handed alpha
Helix 64	AH1	C	512	528	Right-handed alpha
Helix 65	AH2	C	532	540	Right-handed alpha
Helix 66	AH3	C	540	551	Right-handed alpha
Helix 67	AH4	C	553	562	Right-handed alpha
Helix 68	AH5	C	567	574	Right-handed alpha

There are 16 sheets in PDB entry 8WY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	70	74	anti-parallel
Strand 4	A	106	110	anti-parallel
Strand 5	A	123	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	314	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	431	parallel
Strand 4	A	505	507	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	464	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	5	8	anti-parallel
Strand 3	B	70	74	anti-parallel
Strand 4	B	106	110	anti-parallel
Strand 5	B	123	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	314	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	431	parallel
Strand 4	B	505	507	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	464	466	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	5	8	anti-parallel
Strand 3	D	70	74	anti-parallel
Strand 4	D	106	110	anti-parallel
Strand 5	D	123	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	314	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	444	447	anti-parallel
Strand 3	D	464	466	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	C	70	74	anti-parallel
Strand 4	C	106	110	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	314	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	464	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY4