Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WY5 entry

There are 8 chains in PDB entry 8WY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 575
B	MET 1	SER 575
C	MET 1	SER 575
D	MET 1	SER 575
E	T 2	T 20
F	A 2	A 20
G	T 2	T 20
H	A 2	A 20

There are 73 helices in PDB entry 8WY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	83	94	Right-handed alpha
Helix 4	AA4	A	95	97	Right-handed 310
Helix 5	AA5	A	295	309	Right-handed alpha
Helix 6	AA6	A	321	326	Right-handed 310
Helix 7	AA7	A	368	372	Right-handed 310
Helix 8	AA8	A	380	393	Right-handed alpha
Helix 9	AA9	A	395	399	Right-handed 310
Helix 10	AB1	A	413	424	Right-handed alpha
Helix 11	AB2	A	448	455	Right-handed alpha
Helix 12	AB3	A	476	492	Right-handed alpha
Helix 13	AB4	A	493	498	Right-handed alpha
Helix 14	AB5	A	512	529	Right-handed alpha
Helix 15	AB6	A	532	538	Right-handed alpha
Helix 16	AB7	A	545	550	Right-handed alpha
Helix 17	AB8	A	558	563	Right-handed alpha
Helix 18	AB9	A	567	572	Right-handed alpha
Helix 19	AC1	B	32	47	Right-handed alpha
Helix 20	AC2	B	47	52	Right-handed alpha
Helix 21	AC3	B	83	93	Right-handed alpha
Helix 22	AC4	B	295	307	Right-handed alpha
Helix 23	AC5	B	321	326	Right-handed 310
Helix 24	AC6	B	359	367	Right-handed alpha
Helix 25	AC7	B	380	395	Right-handed alpha
Helix 26	AC8	B	396	402	Right-handed alpha
Helix 27	AC9	B	413	424	Right-handed alpha
Helix 28	AD1	B	448	458	Right-handed alpha
Helix 29	AD2	B	476	493	Right-handed alpha
Helix 30	AD3	B	493	503	Right-handed alpha
Helix 31	AD4	B	511	518	Right-handed alpha
Helix 32	AD5	B	524	529	Right-handed alpha
Helix 33	AD6	B	532	540	Right-handed alpha
Helix 34	AD7	B	563	565	Right-handed 310
Helix 35	AD8	B	566	574	Right-handed alpha
Helix 36	AD9	C	32	47	Right-handed alpha
Helix 37	AE1	C	47	52	Right-handed alpha
Helix 38	AE2	C	83	94	Right-handed alpha
Helix 39	AE3	C	95	97	Right-handed 310
Helix 40	AE4	C	295	309	Right-handed alpha
Helix 41	AE5	C	321	326	Right-handed 310
Helix 42	AE6	C	368	372	Right-handed 310
Helix 43	AE7	C	380	391	Right-handed alpha
Helix 44	AE8	C	397	402	Right-handed alpha
Helix 45	AE9	C	413	424	Right-handed alpha
Helix 46	AF1	C	448	458	Right-handed alpha
Helix 47	AF2	C	476	492	Right-handed alpha
Helix 48	AF3	C	493	501	Right-handed alpha
Helix 49	AF4	C	511	516	Right-handed alpha
Helix 50	AF5	C	516	521	Right-handed alpha
Helix 51	AF6	C	523	528	Right-handed alpha
Helix 52	AF7	C	532	539	Right-handed alpha
Helix 53	AF8	C	544	551	Right-handed alpha
Helix 54	AF9	C	569	574	Right-handed alpha
Helix 55	AG1	D	32	47	Right-handed alpha
Helix 56	AG2	D	47	52	Right-handed alpha
Helix 57	AG3	D	83	91	Right-handed alpha
Helix 58	AG4	D	297	308	Right-handed alpha
Helix 59	AG5	D	321	326	Right-handed 310
Helix 60	AG6	D	359	367	Right-handed alpha
Helix 61	AG7	D	380	393	Right-handed alpha
Helix 62	AG8	D	397	402	Right-handed alpha
Helix 63	AG9	D	413	424	Right-handed alpha
Helix 64	AH1	D	448	458	Right-handed alpha
Helix 65	AH2	D	475	489	Right-handed alpha
Helix 66	AH3	D	493	501	Right-handed alpha
Helix 67	AH4	D	511	516	Right-handed alpha
Helix 68	AH5	D	516	521	Right-handed alpha
Helix 69	AH6	D	523	529	Right-handed alpha
Helix 70	AH7	D	532	540	Right-handed alpha
Helix 71	AH8	D	540	546	Right-handed alpha
Helix 72	AH9	D	563	565	Right-handed 310
Helix 73	AI1	D	566	574	Right-handed alpha

There are 16 sheets in PDB entry 8WY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	71	74	anti-parallel
Strand 4	A	106	110	anti-parallel
Strand 5	A	123	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	315	318	parallel
Strand 4	A	25	28	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	431	parallel
Strand 4	A	505	507	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	465	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	5	8	anti-parallel
Strand 3	B	71	74	anti-parallel
Strand 4	B	106	110	anti-parallel
Strand 5	B	123	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	314	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	432	parallel
Strand 4	B	505	508	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	C	71	74	anti-parallel
Strand 4	C	106	110	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	314	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	5	8	anti-parallel
Strand 3	D	71	74	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	122	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	316	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	445	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY5