Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WY8 entry

There are 4 chains in PDB entry 8WY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 11	ILE 1005
B	SER 8	ILE 1005
C	SER 8	ILE 1005
D	GLY 12	ILE 1005

There are235 helices in PDB entry 8WY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	21	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	47	54	Right-handed alpha
Helix 4	AA4	A	58	72	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	155	160	Right-handed alpha
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	186	192	Right-handed alpha
Helix 12	AB3	A	192	197	Right-handed alpha
Helix 13	AB4	A	197	211	Right-handed alpha
Helix 14	AB5	A	222	235	Right-handed alpha
Helix 15	AB6	A	254	263	Right-handed alpha
Helix 16	AB7	A	271	275	Right-handed alpha
Helix 17	AB8	A	281	295	Right-handed alpha
Helix 18	AB9	A	304	317	Right-handed alpha
Helix 19	AC1	A	318	322	Right-handed 310
Helix 20	AC2	A	326	334	Right-handed alpha
Helix 21	AC3	A	355	366	Right-handed alpha
Helix 22	AC4	A	366	372	Right-handed alpha
Helix 23	AC5	A	374	391	Right-handed alpha
Helix 24	AC6	A	411	416	Right-handed alpha
Helix 25	AC7	A	417	427	Right-handed alpha
Helix 26	AC8	A	431	445	Right-handed alpha
Helix 27	AC9	A	447	462	Right-handed alpha
Helix 28	AD1	A	469	494	Right-handed alpha
Helix 29	AD2	A	508	520	Right-handed alpha
Helix 30	AD3	A	532	539	Right-handed alpha
Helix 31	AD4	A	540	550	Right-handed 310
Helix 32	AD5	A	551	571	Right-handed alpha
Helix 33	AD6	A	579	598	Right-handed alpha
Helix 34	AD7	A	600	604	Right-handed 310
Helix 35	AD8	A	605	628	Right-handed alpha
Helix 36	AD9	A	648	659	Right-handed alpha
Helix 37	AE1	A	660	671	Right-handed alpha
Helix 38	AE2	A	680	699	Right-handed alpha
Helix 39	AE3	A	705	723	Right-handed alpha
Helix 40	AE4	A	724	726	Right-handed 310
Helix 41	AE5	A	729	744	Right-handed alpha
Helix 42	AE6	A	750	765	Right-handed alpha
Helix 43	AE7	A	768	786	Right-handed alpha
Helix 44	AE8	A	800	811	Right-handed alpha
Helix 45	AE9	A	817	826	Right-handed alpha
Helix 46	AF1	A	831	841	Right-handed alpha
Helix 47	AF2	A	842	845	Right-handed 310
Helix 48	AF3	A	846	857	Right-handed alpha
Helix 49	AF4	A	861	872	Right-handed alpha
Helix 50	AF5	A	878	897	Right-handed alpha
Helix 51	AF6	A	912	922	Right-handed alpha
Helix 52	AF7	A	928	934	Right-handed 310
Helix 53	AF8	A	937	945	Right-handed alpha
Helix 54	AF9	A	957	962	Right-handed alpha
Helix 55	AG1	A	963	973	Right-handed alpha
Helix 56	AG2	A	976	991	Right-handed alpha
Helix 57	AG3	A	994	1004	Right-handed alpha
Helix 58	AG4	B	9	21	Right-handed alpha
Helix 59	AG5	B	23	40	Right-handed alpha
Helix 60	AG6	B	47	54	Right-handed alpha
Helix 61	AG7	B	58	72	Right-handed alpha
Helix 62	AG8	B	80	95	Right-handed alpha
Helix 63	AG9	B	96	109	Right-handed alpha
Helix 64	AH1	B	115	124	Right-handed alpha
Helix 65	AH2	B	136	146	Right-handed alpha
Helix 66	AH3	B	154	160	Right-handed alpha
Helix 67	AH4	B	179	183	Right-handed 310
Helix 68	AH5	B	186	192	Right-handed alpha
Helix 69	AH6	B	192	197	Right-handed alpha
Helix 70	AH7	B	197	211	Right-handed alpha
Helix 71	AH8	B	222	235	Right-handed alpha
Helix 72	AH9	B	254	264	Right-handed alpha
Helix 73	AI1	B	271	275	Right-handed alpha
Helix 74	AI2	B	281	298	Right-handed alpha
Helix 75	AI3	B	307	317	Right-handed alpha
Helix 76	AI4	B	318	321	Right-handed 310
Helix 77	AI5	B	326	334	Right-handed alpha
Helix 78	AI6	B	355	366	Right-handed alpha
Helix 79	AI7	B	366	372	Right-handed alpha
Helix 80	AI8	B	374	391	Right-handed alpha
Helix 81	AI9	B	411	416	Right-handed alpha
Helix 82	AJ1	B	417	427	Right-handed alpha
Helix 83	AJ2	B	431	445	Right-handed alpha
Helix 84	AJ3	B	447	462	Right-handed alpha
Helix 85	AJ4	B	468	493	Right-handed alpha
Helix 86	AJ5	B	508	520	Right-handed alpha
Helix 87	AJ6	B	523	527	Right-handed 310
Helix 88	AJ7	B	532	539	Right-handed alpha
Helix 89	AJ8	B	540	547	Right-handed 310
Helix 90	AJ9	B	551	558	Right-handed alpha
Helix 91	AK1	B	559	563	Right-handed 310
Helix 92	AK2	B	580	598	Right-handed alpha
Helix 93	AK3	B	600	604	Right-handed 310
Helix 94	AK4	B	605	634	Right-handed alpha
Helix 95	AK5	B	648	659	Right-handed alpha
Helix 96	AK6	B	660	671	Right-handed alpha
Helix 97	AK7	B	680	701	Right-handed alpha
Helix 98	AK8	B	705	723	Right-handed alpha
Helix 99	AK9	B	724	726	Right-handed 310
Helix 100	AL1	B	729	742	Right-handed alpha
Helix 101	AL2	B	750	762	Right-handed alpha
Helix 102	AL3	B	768	786	Right-handed alpha
Helix 103	AL4	B	801	812	Right-handed alpha
Helix 104	AL5	B	817	826	Right-handed alpha
Helix 105	AL6	B	831	841	Right-handed alpha
Helix 106	AL7	B	842	845	Right-handed 310
Helix 107	AL8	B	846	856	Right-handed alpha
Helix 108	AL9	B	861	872	Right-handed alpha
Helix 109	AM1	B	878	895	Right-handed alpha
Helix 110	AM2	B	912	922	Right-handed alpha
Helix 111	AM3	B	929	934	Right-handed 310
Helix 112	AM4	B	937	945	Right-handed alpha
Helix 113	AM5	B	950	955	Right-handed 310
Helix 114	AM6	B	956	962	Right-handed alpha
Helix 115	AM7	B	963	973	Right-handed alpha
Helix 116	AM8	B	976	991	Right-handed alpha
Helix 117	AM9	B	993	1004	Right-handed alpha
Helix 118	AN1	C	9	21	Right-handed alpha
Helix 119	AN2	C	23	40	Right-handed alpha
Helix 120	AN3	C	47	54	Right-handed alpha
Helix 121	AN4	C	58	72	Right-handed alpha
Helix 122	AN5	C	80	109	Right-handed alpha
Helix 123	AN6	C	115	123	Right-handed alpha
Helix 124	AN7	C	136	145	Right-handed alpha
Helix 125	AN8	C	155	159	Right-handed 310
Helix 126	AN9	C	179	183	Right-handed 310
Helix 127	AO1	C	186	192	Right-handed alpha
Helix 128	AO2	C	192	197	Right-handed alpha
Helix 129	AO3	C	197	211	Right-handed alpha
Helix 130	AO4	C	222	235	Right-handed alpha
Helix 131	AO5	C	254	265	Right-handed alpha
Helix 132	AO6	C	271	275	Right-handed alpha
Helix 133	AO7	C	281	297	Right-handed alpha
Helix 134	AO8	C	304	317	Right-handed alpha
Helix 135	AO9	C	318	322	Right-handed 310
Helix 136	AP1	C	329	334	Right-handed alpha
Helix 137	AP2	C	355	366	Right-handed alpha
Helix 138	AP3	C	366	372	Right-handed alpha
Helix 139	AP4	C	374	392	Right-handed alpha
Helix 140	AP5	C	417	427	Right-handed alpha
Helix 141	AP6	C	431	445	Right-handed alpha
Helix 142	AP7	C	447	462	Right-handed alpha
Helix 143	AP8	C	469	494	Right-handed alpha
Helix 144	AP9	C	508	520	Right-handed alpha
Helix 145	AQ1	C	532	539	Right-handed alpha
Helix 146	AQ2	C	540	547	Right-handed 310
Helix 147	AQ3	C	548	550	Right-handed 310
Helix 148	AQ4	C	551	572	Right-handed alpha
Helix 149	AQ5	C	579	598	Right-handed alpha
Helix 150	AQ6	C	600	604	Right-handed 310
Helix 151	AQ7	C	605	628	Right-handed alpha
Helix 152	AQ8	C	648	659	Right-handed alpha
Helix 153	AQ9	C	660	671	Right-handed alpha
Helix 154	AR1	C	672	676	Right-handed 310
Helix 155	AR2	C	680	699	Right-handed alpha
Helix 156	AR3	C	705	723	Right-handed alpha
Helix 157	AR4	C	724	726	Right-handed 310
Helix 158	AR5	C	729	742	Right-handed alpha
Helix 159	AR6	C	750	765	Right-handed alpha
Helix 160	AR7	C	768	786	Right-handed alpha
Helix 161	AR8	C	800	811	Right-handed alpha
Helix 162	AR9	C	817	826	Right-handed alpha
Helix 163	AS1	C	831	841	Right-handed alpha
Helix 164	AS2	C	846	857	Right-handed alpha
Helix 165	AS3	C	861	872	Right-handed alpha
Helix 166	AS4	C	878	897	Right-handed alpha
Helix 167	AS5	C	913	922	Right-handed alpha
Helix 168	AS6	C	928	934	Right-handed 310
Helix 169	AS7	C	937	945	Right-handed alpha
Helix 170	AS8	C	957	962	Right-handed alpha
Helix 171	AS9	C	963	974	Right-handed alpha
Helix 172	AT1	C	976	991	Right-handed alpha
Helix 173	AT2	C	994	1004	Right-handed alpha
Helix 174	AT3	D	13	21	Right-handed alpha
Helix 175	AT4	D	23	39	Right-handed alpha
Helix 176	AT5	D	47	54	Right-handed alpha
Helix 177	AT6	D	58	72	Right-handed alpha
Helix 178	AT7	D	82	95	Right-handed alpha
Helix 179	AT8	D	97	109	Right-handed alpha
Helix 180	AT9	D	115	124	Right-handed alpha
Helix 181	AU1	D	136	146	Right-handed alpha
Helix 182	AU2	D	154	158	Right-handed 310
Helix 183	AU3	D	179	183	Right-handed 310
Helix 184	AU4	D	186	192	Right-handed alpha
Helix 185	AU5	D	192	197	Right-handed alpha
Helix 186	AU6	D	197	211	Right-handed alpha
Helix 187	AU7	D	222	235	Right-handed alpha
Helix 188	AU8	D	254	264	Right-handed alpha
Helix 189	AU9	D	271	275	Right-handed alpha
Helix 190	AV1	D	281	297	Right-handed alpha
Helix 191	AV2	D	307	317	Right-handed alpha
Helix 192	AV3	D	318	321	Right-handed 310
Helix 193	AV4	D	326	334	Right-handed alpha
Helix 194	AV5	D	355	366	Right-handed alpha
Helix 195	AV6	D	366	372	Right-handed alpha
Helix 196	AV7	D	374	391	Right-handed alpha
Helix 197	AV8	D	411	416	Right-handed alpha
Helix 198	AV9	D	417	427	Right-handed alpha
Helix 199	AW1	D	431	445	Right-handed alpha
Helix 200	AW2	D	447	461	Right-handed alpha
Helix 201	AW3	D	468	493	Right-handed alpha
Helix 202	AW4	D	508	519	Right-handed alpha
Helix 203	AW5	D	524	531	Right-handed alpha
Helix 204	AW6	D	532	539	Right-handed alpha
Helix 205	AW7	D	540	547	Right-handed 310
Helix 206	AW8	D	551	558	Right-handed alpha
Helix 207	AW9	D	559	563	Right-handed 310
Helix 208	AX1	D	580	598	Right-handed alpha
Helix 209	AX2	D	600	604	Right-handed 310
Helix 210	AX3	D	605	635	Right-handed alpha
Helix 211	AX4	D	648	659	Right-handed alpha
Helix 212	AX5	D	660	671	Right-handed alpha
Helix 213	AX6	D	672	676	Right-handed 310
Helix 214	AX7	D	680	700	Right-handed alpha
Helix 215	AX8	D	705	723	Right-handed alpha
Helix 216	AX9	D	724	726	Right-handed 310
Helix 217	AY1	D	729	742	Right-handed alpha
Helix 218	AY2	D	750	762	Right-handed alpha
Helix 219	AY3	D	768	786	Right-handed alpha
Helix 220	AY4	D	800	812	Right-handed alpha
Helix 221	AY5	D	817	826	Right-handed alpha
Helix 222	AY6	D	831	841	Right-handed alpha
Helix 223	AY7	D	842	845	Right-handed 310
Helix 224	AY8	D	846	856	Right-handed alpha
Helix 225	AY9	D	861	872	Right-handed alpha
Helix 226	AZ1	D	878	895	Right-handed alpha
Helix 227	AZ2	D	912	922	Right-handed alpha
Helix 228	AZ3	D	929	934	Right-handed 310
Helix 229	AZ4	D	937	945	Right-handed alpha
Helix 230	AZ5	D	950	954	Right-handed 310
Helix 231	AZ6	D	955	956	Right-handed 310
Helix 232	AZ7	D	957	962	Right-handed alpha
Helix 233	AZ8	D	963	972	Right-handed alpha
Helix 234	AZ9	D	976	991	Right-handed alpha
Helix 235	BA1	D	993	1004	Right-handed alpha

There are 9 sheets in PDB entry 8WY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	216	parallel
Strand 6	C	244	247	parallel
Strand 7	C	267	270	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	647	first strand
Strand 2	D	677	678	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WY8