Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WYA entry

There are 6 chains in PDB entry 8WYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ILE 1005
B	ASP 23	ILE 1005
C	THR 8	GLU 236
D	LEU 22	ILE 1005
E	LEU 22	ILE 1005
F	THR 8	GLU 236

There are227 helices in PDB entry 8WYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	48	54	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	80	95	Right-handed alpha
Helix 5	AA5	A	96	109	Right-handed alpha
Helix 6	AA6	A	115	124	Right-handed alpha
Helix 7	AA7	A	136	144	Right-handed alpha
Helix 8	AA8	A	155	160	Right-handed alpha
Helix 9	AA9	A	179	183	Right-handed 310
Helix 10	AB1	A	186	192	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	197	210	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	254	265	Right-handed alpha
Helix 15	AB6	A	271	275	Right-handed alpha
Helix 16	AB7	A	281	294	Right-handed alpha
Helix 17	AB8	A	304	317	Right-handed alpha
Helix 18	AB9	A	318	322	Right-handed 310
Helix 19	AC1	A	326	328	Right-handed 310
Helix 20	AC2	A	329	334	Right-handed alpha
Helix 21	AC3	A	355	366	Right-handed alpha
Helix 22	AC4	A	367	372	Right-handed alpha
Helix 23	AC5	A	374	391	Right-handed alpha
Helix 24	AC6	A	411	416	Right-handed alpha
Helix 25	AC7	A	417	427	Right-handed alpha
Helix 26	AC8	A	431	445	Right-handed alpha
Helix 27	AC9	A	447	462	Right-handed alpha
Helix 28	AD1	A	469	494	Right-handed alpha
Helix 29	AD2	A	508	520	Right-handed alpha
Helix 30	AD3	A	532	539	Right-handed alpha
Helix 31	AD4	A	542	546	Right-handed 310
Helix 32	AD5	A	551	572	Right-handed alpha
Helix 33	AD6	A	579	598	Right-handed alpha
Helix 34	AD7	A	600	604	Right-handed 310
Helix 35	AD8	A	605	628	Right-handed alpha
Helix 36	AD9	A	648	658	Right-handed alpha
Helix 37	AE1	A	660	671	Right-handed alpha
Helix 38	AE2	A	680	699	Right-handed alpha
Helix 39	AE3	A	706	723	Right-handed alpha
Helix 40	AE4	A	724	726	Right-handed 310
Helix 41	AE5	A	729	742	Right-handed alpha
Helix 42	AE6	A	750	765	Right-handed alpha
Helix 43	AE7	A	768	786	Right-handed alpha
Helix 44	AE8	A	800	811	Right-handed alpha
Helix 45	AE9	A	817	826	Right-handed alpha
Helix 46	AF1	A	831	841	Right-handed alpha
Helix 47	AF2	A	846	857	Right-handed alpha
Helix 48	AF3	A	863	872	Right-handed alpha
Helix 49	AF4	A	878	897	Right-handed alpha
Helix 50	AF5	A	913	922	Right-handed alpha
Helix 51	AF6	A	929	933	Right-handed 310
Helix 52	AF7	A	937	945	Right-handed alpha
Helix 53	AF8	A	950	955	Right-handed 310
Helix 54	AF9	A	956	962	Right-handed alpha
Helix 55	AG1	A	963	974	Right-handed alpha
Helix 56	AG2	A	976	991	Right-handed alpha
Helix 57	AG3	A	994	1004	Right-handed alpha
Helix 58	AG4	B	24	39	Right-handed alpha
Helix 59	AG5	B	48	54	Right-handed alpha
Helix 60	AG6	B	58	72	Right-handed alpha
Helix 61	AG7	B	80	96	Right-handed alpha
Helix 62	AG8	B	96	109	Right-handed alpha
Helix 63	AG9	B	115	124	Right-handed alpha
Helix 64	AH1	B	136	146	Right-handed alpha
Helix 65	AH2	B	155	159	Right-handed 310
Helix 66	AH3	B	186	192	Right-handed alpha
Helix 67	AH4	B	192	197	Right-handed alpha
Helix 68	AH5	B	197	211	Right-handed alpha
Helix 69	AH6	B	222	235	Right-handed alpha
Helix 70	AH7	B	254	263	Right-handed alpha
Helix 71	AH8	B	282	299	Right-handed alpha
Helix 72	AH9	B	304	317	Right-handed alpha
Helix 73	AI1	B	318	322	Right-handed 310
Helix 74	AI2	B	328	334	Right-handed alpha
Helix 75	AI3	B	355	366	Right-handed alpha
Helix 76	AI4	B	374	391	Right-handed alpha
Helix 77	AI5	B	411	416	Right-handed alpha
Helix 78	AI6	B	417	427	Right-handed alpha
Helix 79	AI7	B	431	445	Right-handed alpha
Helix 80	AI8	B	447	462	Right-handed alpha
Helix 81	AI9	B	468	495	Right-handed alpha
Helix 82	AJ1	B	495	501	Right-handed alpha
Helix 83	AJ2	B	508	520	Right-handed alpha
Helix 84	AJ3	B	532	539	Right-handed alpha
Helix 85	AJ4	B	540	546	Right-handed 310
Helix 86	AJ5	B	552	561	Right-handed alpha
Helix 87	AJ6	B	580	598	Right-handed alpha
Helix 88	AJ7	B	600	604	Right-handed 310
Helix 89	AJ8	B	605	628	Right-handed alpha
Helix 90	AJ9	B	648	659	Right-handed alpha
Helix 91	AK1	B	660	671	Right-handed alpha
Helix 92	AK2	B	672	676	Right-handed 310
Helix 93	AK3	B	680	701	Right-handed alpha
Helix 94	AK4	B	705	723	Right-handed alpha
Helix 95	AK5	B	724	726	Right-handed 310
Helix 96	AK6	B	729	742	Right-handed alpha
Helix 97	AK7	B	750	765	Right-handed alpha
Helix 98	AK8	B	768	786	Right-handed alpha
Helix 99	AK9	B	800	813	Right-handed alpha
Helix 100	AL1	B	818	826	Right-handed alpha
Helix 101	AL2	B	831	840	Right-handed alpha
Helix 102	AL3	B	841	845	Right-handed 310
Helix 103	AL4	B	846	856	Right-handed alpha
Helix 104	AL5	B	861	871	Right-handed alpha
Helix 105	AL6	B	878	897	Right-handed alpha
Helix 106	AL7	B	912	922	Right-handed alpha
Helix 107	AL8	B	929	934	Right-handed 310
Helix 108	AL9	B	940	945	Right-handed alpha
Helix 109	AM1	B	946	949	Right-handed 310
Helix 110	AM2	B	950	954	Right-handed 310
Helix 111	AM3	B	955	956	Right-handed 310
Helix 112	AM4	B	957	962	Right-handed alpha
Helix 113	AM5	B	963	974	Right-handed alpha
Helix 114	AM6	B	976	991	Right-handed alpha
Helix 115	AM7	B	995	1004	Right-handed alpha
Helix 116	AM8	C	69	76	Right-handed alpha
Helix 117	AM9	D	26	40	Right-handed alpha
Helix 118	AN1	D	48	54	Right-handed alpha
Helix 119	AN2	D	58	71	Right-handed alpha
Helix 120	AN3	D	80	96	Right-handed alpha
Helix 121	AN4	D	97	108	Right-handed alpha
Helix 122	AN5	D	115	124	Right-handed alpha
Helix 123	AN6	D	137	146	Right-handed alpha
Helix 124	AN7	D	155	159	Right-handed 310
Helix 125	AN8	D	179	183	Right-handed 310
Helix 126	AN9	D	186	192	Right-handed alpha
Helix 127	AO1	D	192	197	Right-handed alpha
Helix 128	AO2	D	197	211	Right-handed alpha
Helix 129	AO3	D	222	235	Right-handed alpha
Helix 130	AO4	D	254	263	Right-handed alpha
Helix 131	AO5	D	271	275	Right-handed alpha
Helix 132	AO6	D	282	296	Right-handed alpha
Helix 133	AO7	D	304	317	Right-handed alpha
Helix 134	AO8	D	318	322	Right-handed 310
Helix 135	AO9	D	326	328	Right-handed 310
Helix 136	AP1	D	329	334	Right-handed alpha
Helix 137	AP2	D	355	366	Right-handed alpha
Helix 138	AP3	D	366	372	Right-handed alpha
Helix 139	AP4	D	374	391	Right-handed alpha
Helix 140	AP5	D	411	416	Right-handed alpha
Helix 141	AP6	D	419	427	Right-handed alpha
Helix 142	AP7	D	431	445	Right-handed alpha
Helix 143	AP8	D	447	462	Right-handed alpha
Helix 144	AP9	D	469	494	Right-handed alpha
Helix 145	AQ1	D	508	521	Right-handed alpha
Helix 146	AQ2	D	532	539	Right-handed alpha
Helix 147	AQ3	D	551	572	Right-handed alpha
Helix 148	AQ4	D	579	598	Right-handed alpha
Helix 149	AQ5	D	600	604	Right-handed 310
Helix 150	AQ6	D	605	628	Right-handed alpha
Helix 151	AQ7	D	648	659	Right-handed alpha
Helix 152	AQ8	D	660	671	Right-handed alpha
Helix 153	AQ9	D	680	699	Right-handed alpha
Helix 154	AR1	D	706	722	Right-handed alpha
Helix 155	AR2	D	723	726	Right-handed 310
Helix 156	AR3	D	729	743	Right-handed alpha
Helix 157	AR4	D	750	765	Right-handed alpha
Helix 158	AR5	D	768	786	Right-handed alpha
Helix 159	AR6	D	800	811	Right-handed alpha
Helix 160	AR7	D	817	826	Right-handed alpha
Helix 161	AR8	D	831	841	Right-handed alpha
Helix 162	AR9	D	846	857	Right-handed alpha
Helix 163	AS1	D	863	872	Right-handed alpha
Helix 164	AS2	D	878	897	Right-handed alpha
Helix 165	AS3	D	911	914	Right-handed 310
Helix 166	AS4	D	915	922	Right-handed alpha
Helix 167	AS5	D	929	934	Right-handed 310
Helix 168	AS6	D	937	945	Right-handed alpha
Helix 169	AS7	D	956	962	Right-handed alpha
Helix 170	AS8	D	963	974	Right-handed alpha
Helix 171	AS9	D	976	991	Right-handed alpha
Helix 172	AT1	D	994	1004	Right-handed alpha
Helix 173	AT2	E	23	39	Right-handed alpha
Helix 174	AT3	E	47	52	Right-handed alpha
Helix 175	AT4	E	58	70	Right-handed alpha
Helix 176	AT5	E	80	108	Right-handed alpha
Helix 177	AT6	E	115	123	Right-handed alpha
Helix 178	AT7	E	136	146	Right-handed alpha
Helix 179	AT8	E	179	183	Right-handed 310
Helix 180	AT9	E	186	192	Right-handed alpha
Helix 181	AU1	E	192	197	Right-handed alpha
Helix 182	AU2	E	197	211	Right-handed alpha
Helix 183	AU3	E	222	235	Right-handed alpha
Helix 184	AU4	E	254	265	Right-handed alpha
Helix 185	AU5	E	271	275	Right-handed alpha
Helix 186	AU6	E	281	298	Right-handed alpha
Helix 187	AU7	E	304	317	Right-handed alpha
Helix 188	AU8	E	318	322	Right-handed 310
Helix 189	AU9	E	329	334	Right-handed alpha
Helix 190	AV1	E	355	366	Right-handed alpha
Helix 191	AV2	E	374	391	Right-handed alpha
Helix 192	AV3	E	419	427	Right-handed alpha
Helix 193	AV4	E	431	445	Right-handed alpha
Helix 194	AV5	E	447	462	Right-handed alpha
Helix 195	AV6	E	468	495	Right-handed alpha
Helix 196	AV7	E	495	501	Right-handed alpha
Helix 197	AV8	E	508	520	Right-handed alpha
Helix 198	AV9	E	532	539	Right-handed alpha
Helix 199	AW1	E	541	546	Right-handed 310
Helix 200	AW2	E	552	561	Right-handed alpha
Helix 201	AW3	E	580	596	Right-handed alpha
Helix 202	AW4	E	600	604	Right-handed 310
Helix 203	AW5	E	605	628	Right-handed alpha
Helix 204	AW6	E	649	659	Right-handed alpha
Helix 205	AW7	E	660	671	Right-handed alpha
Helix 206	AW8	E	680	700	Right-handed alpha
Helix 207	AW9	E	705	723	Right-handed alpha
Helix 208	AX1	E	724	726	Right-handed 310
Helix 209	AX2	E	729	742	Right-handed alpha
Helix 210	AX3	E	750	762	Right-handed alpha
Helix 211	AX4	E	768	786	Right-handed alpha
Helix 212	AX5	E	800	813	Right-handed alpha
Helix 213	AX6	E	817	826	Right-handed alpha
Helix 214	AX7	E	831	841	Right-handed alpha
Helix 215	AX8	E	846	856	Right-handed alpha
Helix 216	AX9	E	861	872	Right-handed alpha
Helix 217	AY1	E	880	897	Right-handed alpha
Helix 218	AY2	E	911	922	Right-handed alpha
Helix 219	AY3	E	929	934	Right-handed 310
Helix 220	AY4	E	940	945	Right-handed alpha
Helix 221	AY5	E	946	949	Right-handed 310
Helix 222	AY6	E	950	954	Right-handed 310
Helix 223	AY7	E	955	962	Right-handed 310
Helix 224	AY8	E	963	974	Right-handed alpha
Helix 225	AY9	E	976	991	Right-handed alpha
Helix 226	AZ1	E	994	1003	Right-handed alpha
Helix 227	AZ2	F	69	76	Right-handed alpha

There are 13 sheets in PDB entry 8WYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	269	270	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	C	21	31	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	218	222	anti-parallel
Strand 5	C	193	201	anti-parallel
Strand 6	C	171	176	anti-parallel
Strand 7	C	10	15	anti-parallel
Strand 8	C	21	31	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	795	first strand
Strand 2	C	224	225	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	43	46	parallel
Strand 5	D	213	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	346	348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	646	647	first strand
Strand 2	E	677	678	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	794	795	first strand
Strand 2	F	224	225	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	906	907	first strand
Strand 2	F	233	235	anti-parallel
Strand 3	F	192	196	anti-parallel
Strand 4	F	171	176	anti-parallel
Strand 5	F	10	15	anti-parallel
Strand 6	F	21	31	anti-parallel
Strand 7	F	60	68	anti-parallel
Strand 8	F	218	222	anti-parallel
Strand 9	F	198	200	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYA