Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WYD entry

There are 6 chains in PDB entry 8WYD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	ILE 1005
B	SER 8	ILE 1005
E	THR 11	PHE 126
C	LEU 15	ILE 1005
D	SER 8	ILE 1005
F	THR 11	PHE 126

There are240 helices in PDB entry 8WYD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	21	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	179	183	Right-handed 310
Helix 10	AB1	A	186	192	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	197	211	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	254	264	Right-handed alpha
Helix 15	AB6	A	271	275	Right-handed alpha
Helix 16	AB7	A	281	295	Right-handed alpha
Helix 17	AB8	A	304	317	Right-handed alpha
Helix 18	AB9	A	318	321	Right-handed 310
Helix 19	AC1	A	326	328	Right-handed 310
Helix 20	AC2	A	329	334	Right-handed alpha
Helix 21	AC3	A	355	366	Right-handed alpha
Helix 22	AC4	A	366	372	Right-handed alpha
Helix 23	AC5	A	374	391	Right-handed alpha
Helix 24	AC6	A	417	427	Right-handed alpha
Helix 25	AC7	A	431	445	Right-handed alpha
Helix 26	AC8	A	447	462	Right-handed alpha
Helix 27	AC9	A	469	495	Right-handed alpha
Helix 28	AD1	A	495	501	Right-handed alpha
Helix 29	AD2	A	508	520	Right-handed alpha
Helix 30	AD3	A	523	527	Right-handed 310
Helix 31	AD4	A	532	539	Right-handed alpha
Helix 32	AD5	A	540	546	Right-handed 310
Helix 33	AD6	A	547	550	Right-handed 310
Helix 34	AD7	A	551	572	Right-handed alpha
Helix 35	AD8	A	581	598	Right-handed alpha
Helix 36	AD9	A	600	604	Right-handed 310
Helix 37	AE1	A	605	628	Right-handed alpha
Helix 38	AE2	A	648	659	Right-handed alpha
Helix 39	AE3	A	660	671	Right-handed alpha
Helix 40	AE4	A	672	676	Right-handed 310
Helix 41	AE5	A	680	699	Right-handed alpha
Helix 42	AE6	A	705	723	Right-handed alpha
Helix 43	AE7	A	724	726	Right-handed 310
Helix 44	AE8	A	729	743	Right-handed alpha
Helix 45	AE9	A	750	761	Right-handed alpha
Helix 46	AF1	A	768	787	Right-handed alpha
Helix 47	AF2	A	800	812	Right-handed alpha
Helix 48	AF3	A	817	826	Right-handed alpha
Helix 49	AF4	A	831	841	Right-handed alpha
Helix 50	AF5	A	846	857	Right-handed alpha
Helix 51	AF6	A	861	872	Right-handed alpha
Helix 52	AF7	A	878	897	Right-handed alpha
Helix 53	AF8	A	912	922	Right-handed alpha
Helix 54	AF9	A	929	934	Right-handed 310
Helix 55	AG1	A	937	945	Right-handed alpha
Helix 56	AG2	A	950	954	Right-handed 310
Helix 57	AG3	A	955	961	Right-handed 310
Helix 58	AG4	A	963	973	Right-handed alpha
Helix 59	AG5	A	976	991	Right-handed alpha
Helix 60	AG6	A	994	1004	Right-handed alpha
Helix 61	AG7	B	9	21	Right-handed alpha
Helix 62	AG8	B	23	40	Right-handed alpha
Helix 63	AG9	B	47	54	Right-handed alpha
Helix 64	AH1	B	58	72	Right-handed alpha
Helix 65	AH2	B	80	95	Right-handed alpha
Helix 66	AH3	B	96	109	Right-handed alpha
Helix 67	AH4	B	115	124	Right-handed alpha
Helix 68	AH5	B	136	145	Right-handed alpha
Helix 69	AH6	B	179	183	Right-handed 310
Helix 70	AH7	B	186	192	Right-handed alpha
Helix 71	AH8	B	192	197	Right-handed alpha
Helix 72	AH9	B	197	211	Right-handed alpha
Helix 73	AI1	B	222	235	Right-handed alpha
Helix 74	AI2	B	254	264	Right-handed alpha
Helix 75	AI3	B	271	275	Right-handed alpha
Helix 76	AI4	B	281	298	Right-handed alpha
Helix 77	AI5	B	304	317	Right-handed alpha
Helix 78	AI6	B	318	321	Right-handed 310
Helix 79	AI7	B	326	334	Right-handed alpha
Helix 80	AI8	B	355	366	Right-handed alpha
Helix 81	AI9	B	367	371	Right-handed 310
Helix 82	AJ1	B	374	391	Right-handed alpha
Helix 83	AJ2	B	398	400	Right-handed 310
Helix 84	AJ3	B	417	427	Right-handed alpha
Helix 85	AJ4	B	431	445	Right-handed alpha
Helix 86	AJ5	B	447	462	Right-handed alpha
Helix 87	AJ6	B	468	495	Right-handed alpha
Helix 88	AJ7	B	508	519	Right-handed alpha
Helix 89	AJ8	B	534	539	Right-handed alpha
Helix 90	AJ9	B	540	547	Right-handed 310
Helix 91	AK1	B	551	557	Right-handed alpha
Helix 92	AK2	B	558	563	Right-handed 310
Helix 93	AK3	B	580	598	Right-handed alpha
Helix 94	AK4	B	600	604	Right-handed 310
Helix 95	AK5	B	605	634	Right-handed alpha
Helix 96	AK6	B	648	659	Right-handed alpha
Helix 97	AK7	B	660	671	Right-handed alpha
Helix 98	AK8	B	680	701	Right-handed alpha
Helix 99	AK9	B	705	723	Right-handed alpha
Helix 100	AL1	B	724	726	Right-handed 310
Helix 101	AL2	B	729	743	Right-handed alpha
Helix 102	AL3	B	750	761	Right-handed alpha
Helix 103	AL4	B	768	785	Right-handed alpha
Helix 104	AL5	B	800	813	Right-handed alpha
Helix 105	AL6	B	817	826	Right-handed alpha
Helix 106	AL7	B	831	839	Right-handed alpha
Helix 107	AL8	B	841	845	Right-handed 310
Helix 108	AL9	B	846	855	Right-handed alpha
Helix 109	AM1	B	861	872	Right-handed alpha
Helix 110	AM2	B	878	895	Right-handed alpha
Helix 111	AM3	B	912	922	Right-handed alpha
Helix 112	AM4	B	929	934	Right-handed 310
Helix 113	AM5	B	937	945	Right-handed alpha
Helix 114	AM6	B	955	959	Right-handed 310
Helix 115	AM7	B	963	972	Right-handed alpha
Helix 116	AM8	B	976	992	Right-handed alpha
Helix 117	AM9	B	993	1002	Right-handed alpha
Helix 118	AN1	E	95	107	Right-handed alpha
Helix 119	AN2	C	16	21	Right-handed alpha
Helix 120	AN3	C	23	40	Right-handed alpha
Helix 121	AN4	C	47	54	Right-handed alpha
Helix 122	AN5	C	58	71	Right-handed alpha
Helix 123	AN6	C	82	96	Right-handed alpha
Helix 124	AN7	C	96	109	Right-handed alpha
Helix 125	AN8	C	115	124	Right-handed alpha
Helix 126	AN9	C	136	146	Right-handed alpha
Helix 127	AO1	C	155	160	Right-handed alpha
Helix 128	AO2	C	192	197	Right-handed alpha
Helix 129	AO3	C	197	211	Right-handed alpha
Helix 130	AO4	C	222	235	Right-handed alpha
Helix 131	AO5	C	254	265	Right-handed alpha
Helix 132	AO6	C	271	275	Right-handed alpha
Helix 133	AO7	C	281	296	Right-handed alpha
Helix 134	AO8	C	304	317	Right-handed alpha
Helix 135	AO9	C	318	322	Right-handed 310
Helix 136	AP1	C	326	328	Right-handed 310
Helix 137	AP2	C	329	334	Right-handed alpha
Helix 138	AP3	C	355	366	Right-handed alpha
Helix 139	AP4	C	366	373	Right-handed alpha
Helix 140	AP5	C	374	392	Right-handed alpha
Helix 141	AP6	C	411	416	Right-handed alpha
Helix 142	AP7	C	417	427	Right-handed alpha
Helix 143	AP8	C	431	445	Right-handed alpha
Helix 144	AP9	C	447	462	Right-handed alpha
Helix 145	AQ1	C	469	495	Right-handed alpha
Helix 146	AQ2	C	495	501	Right-handed alpha
Helix 147	AQ3	C	508	520	Right-handed alpha
Helix 148	AQ4	C	532	539	Right-handed alpha
Helix 149	AQ5	C	540	546	Right-handed 310
Helix 150	AQ6	C	547	550	Right-handed 310
Helix 151	AQ7	C	551	572	Right-handed alpha
Helix 152	AQ8	C	581	598	Right-handed alpha
Helix 153	AQ9	C	600	604	Right-handed 310
Helix 154	AR1	C	605	628	Right-handed alpha
Helix 155	AR2	C	648	659	Right-handed alpha
Helix 156	AR3	C	660	671	Right-handed alpha
Helix 157	AR4	C	672	676	Right-handed 310
Helix 158	AR5	C	680	699	Right-handed alpha
Helix 159	AR6	C	705	723	Right-handed alpha
Helix 160	AR7	C	724	726	Right-handed 310
Helix 161	AR8	C	729	742	Right-handed alpha
Helix 162	AR9	C	750	761	Right-handed alpha
Helix 163	AS1	C	768	786	Right-handed alpha
Helix 164	AS2	C	800	812	Right-handed alpha
Helix 165	AS3	C	817	826	Right-handed alpha
Helix 166	AS4	C	831	841	Right-handed alpha
Helix 167	AS5	C	842	845	Right-handed 310
Helix 168	AS6	C	846	857	Right-handed alpha
Helix 169	AS7	C	861	872	Right-handed alpha
Helix 170	AS8	C	878	897	Right-handed alpha
Helix 171	AS9	C	912	922	Right-handed alpha
Helix 172	AT1	C	929	934	Right-handed 310
Helix 173	AT2	C	937	945	Right-handed alpha
Helix 174	AT3	C	950	954	Right-handed 310
Helix 175	AT4	C	955	956	Right-handed 310
Helix 176	AT5	C	957	962	Right-handed alpha
Helix 177	AT6	C	963	972	Right-handed alpha
Helix 178	AT7	C	976	991	Right-handed alpha
Helix 179	AT8	C	994	1004	Right-handed alpha
Helix 180	AT9	D	9	22	Right-handed alpha
Helix 181	AU1	D	23	40	Right-handed alpha
Helix 182	AU2	D	47	54	Right-handed alpha
Helix 183	AU3	D	58	72	Right-handed alpha
Helix 184	AU4	D	82	96	Right-handed alpha
Helix 185	AU5	D	97	109	Right-handed alpha
Helix 186	AU6	D	115	124	Right-handed alpha
Helix 187	AU7	D	136	145	Right-handed alpha
Helix 188	AU8	D	179	183	Right-handed 310
Helix 189	AU9	D	186	192	Right-handed alpha
Helix 190	AV1	D	192	197	Right-handed alpha
Helix 191	AV2	D	197	210	Right-handed alpha
Helix 192	AV3	D	222	234	Right-handed alpha
Helix 193	AV4	D	254	264	Right-handed alpha
Helix 194	AV5	D	271	275	Right-handed alpha
Helix 195	AV6	D	281	298	Right-handed alpha
Helix 196	AV7	D	304	317	Right-handed alpha
Helix 197	AV8	D	318	321	Right-handed 310
Helix 198	AV9	D	326	334	Right-handed alpha
Helix 199	AW1	D	355	366	Right-handed alpha
Helix 200	AW2	D	369	373	Right-handed 310
Helix 201	AW3	D	374	391	Right-handed alpha
Helix 202	AW4	D	411	416	Right-handed alpha
Helix 203	AW5	D	417	427	Right-handed alpha
Helix 204	AW6	D	431	445	Right-handed alpha
Helix 205	AW7	D	447	462	Right-handed alpha
Helix 206	AW8	D	468	495	Right-handed alpha
Helix 207	AW9	D	508	519	Right-handed alpha
Helix 208	AX1	D	524	530	Right-handed alpha
Helix 209	AX2	D	532	539	Right-handed alpha
Helix 210	AX3	D	540	547	Right-handed 310
Helix 211	AX4	D	551	557	Right-handed alpha
Helix 212	AX5	D	558	563	Right-handed 310
Helix 213	AX6	D	580	598	Right-handed alpha
Helix 214	AX7	D	600	604	Right-handed 310
Helix 215	AX8	D	605	635	Right-handed alpha
Helix 216	AX9	D	648	659	Right-handed alpha
Helix 217	AY1	D	660	671	Right-handed alpha
Helix 218	AY2	D	672	676	Right-handed 310
Helix 219	AY3	D	680	700	Right-handed alpha
Helix 220	AY4	D	705	723	Right-handed alpha
Helix 221	AY5	D	724	726	Right-handed 310
Helix 222	AY6	D	729	742	Right-handed alpha
Helix 223	AY7	D	750	761	Right-handed alpha
Helix 224	AY8	D	768	785	Right-handed alpha
Helix 225	AY9	D	786	788	Right-handed 310
Helix 226	AZ1	D	800	813	Right-handed alpha
Helix 227	AZ2	D	817	827	Right-handed alpha
Helix 228	AZ3	D	831	840	Right-handed alpha
Helix 229	AZ4	D	841	845	Right-handed 310
Helix 230	AZ5	D	846	855	Right-handed alpha
Helix 231	AZ6	D	861	871	Right-handed alpha
Helix 232	AZ7	D	878	895	Right-handed alpha
Helix 233	AZ8	D	912	922	Right-handed alpha
Helix 234	AZ9	D	930	934	Right-handed 310
Helix 235	BA1	D	937	945	Right-handed alpha
Helix 236	BA2	D	955	962	Right-handed 310
Helix 237	BA3	D	963	972	Right-handed alpha
Helix 238	BA4	D	976	992	Right-handed alpha
Helix 239	BA5	D	993	1004	Right-handed alpha
Helix 240	BA6	F	95	107	Right-handed alpha

There are 14 sheets in PDB entry 8WYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	22	24	anti-parallel
Strand 4	E	112	113	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	38	48	anti-parallel
Strand 4	E	27	33	anti-parallel
Strand 5	E	81	88	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	38	48	anti-parallel
Strand 4	E	115	118	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	216	parallel
Strand 6	C	244	247	parallel
Strand 7	C	267	270	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	F	15	17	anti-parallel
Strand 3	F	22	24	anti-parallel
Strand 4	F	112	113	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	62	68	anti-parallel
Strand 3	F	38	48	anti-parallel
Strand 4	F	27	33	anti-parallel
Strand 5	F	81	88	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	62	68	anti-parallel
Strand 3	F	38	48	anti-parallel
Strand 4	F	115	118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WYD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYD