Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WYF entry

There are 5 chains in PDB entry 8WYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	ILE 1005
B	SER 8	ILE 1005
C	ASP 23	GLN 297
D	VAL 26	GLN 297
E	THR 11	PHE 126

There are150 helices in PDB entry 8WYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	47	54	Right-handed alpha
Helix 3	AA3	A	58	71	Right-handed alpha
Helix 4	AA4	A	80	109	Right-handed alpha
Helix 5	AA5	A	115	124	Right-handed alpha
Helix 6	AA6	A	136	145	Right-handed alpha
Helix 7	AA7	A	186	192	Right-handed alpha
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	222	234	Right-handed alpha
Helix 11	AB2	A	254	263	Right-handed alpha
Helix 12	AB3	A	271	275	Right-handed alpha
Helix 13	AB4	A	281	296	Right-handed alpha
Helix 14	AB5	A	304	317	Right-handed alpha
Helix 15	AB6	A	318	322	Right-handed 310
Helix 16	AB7	A	326	334	Right-handed alpha
Helix 17	AB8	A	355	366	Right-handed alpha
Helix 18	AB9	A	366	373	Right-handed alpha
Helix 19	AC1	A	374	392	Right-handed alpha
Helix 20	AC2	A	417	427	Right-handed alpha
Helix 21	AC3	A	431	445	Right-handed alpha
Helix 22	AC4	A	447	462	Right-handed alpha
Helix 23	AC5	A	469	495	Right-handed alpha
Helix 24	AC6	A	495	501	Right-handed alpha
Helix 25	AC7	A	508	521	Right-handed alpha
Helix 26	AC8	A	532	539	Right-handed alpha
Helix 27	AC9	A	540	550	Right-handed 310
Helix 28	AD1	A	551	572	Right-handed alpha
Helix 29	AD2	A	581	598	Right-handed alpha
Helix 30	AD3	A	600	604	Right-handed 310
Helix 31	AD4	A	605	629	Right-handed alpha
Helix 32	AD5	A	648	659	Right-handed alpha
Helix 33	AD6	A	660	671	Right-handed alpha
Helix 34	AD7	A	672	676	Right-handed 310
Helix 35	AD8	A	680	699	Right-handed alpha
Helix 36	AD9	A	705	723	Right-handed alpha
Helix 37	AE1	A	724	726	Right-handed 310
Helix 38	AE2	A	729	742	Right-handed alpha
Helix 39	AE3	A	750	762	Right-handed alpha
Helix 40	AE4	A	768	788	Right-handed alpha
Helix 41	AE5	A	800	812	Right-handed alpha
Helix 42	AE6	A	817	826	Right-handed alpha
Helix 43	AE7	A	832	841	Right-handed alpha
Helix 44	AE8	A	842	845	Right-handed 310
Helix 45	AE9	A	846	857	Right-handed alpha
Helix 46	AF1	A	861	872	Right-handed alpha
Helix 47	AF2	A	878	897	Right-handed alpha
Helix 48	AF3	A	912	922	Right-handed alpha
Helix 49	AF4	A	929	934	Right-handed 310
Helix 50	AF5	A	937	945	Right-handed alpha
Helix 51	AF6	A	950	954	Right-handed 310
Helix 52	AF7	A	955	956	Right-handed 310
Helix 53	AF8	A	957	962	Right-handed alpha
Helix 54	AF9	A	963	973	Right-handed alpha
Helix 55	AG1	A	976	991	Right-handed alpha
Helix 56	AG2	A	993	1004	Right-handed alpha
Helix 57	AG3	B	9	21	Right-handed alpha
Helix 58	AG4	B	23	40	Right-handed alpha
Helix 59	AG5	B	47	54	Right-handed alpha
Helix 60	AG6	B	58	72	Right-handed alpha
Helix 61	AG7	B	80	95	Right-handed alpha
Helix 62	AG8	B	96	109	Right-handed alpha
Helix 63	AG9	B	115	124	Right-handed alpha
Helix 64	AH1	B	136	146	Right-handed alpha
Helix 65	AH2	B	154	160	Right-handed alpha
Helix 66	AH3	B	179	183	Right-handed 310
Helix 67	AH4	B	186	192	Right-handed alpha
Helix 68	AH5	B	192	197	Right-handed alpha
Helix 69	AH6	B	197	211	Right-handed alpha
Helix 70	AH7	B	222	235	Right-handed alpha
Helix 71	AH8	B	254	264	Right-handed alpha
Helix 72	AH9	B	271	275	Right-handed alpha
Helix 73	AI1	B	281	298	Right-handed alpha
Helix 74	AI2	B	304	317	Right-handed alpha
Helix 75	AI3	B	318	322	Right-handed 310
Helix 76	AI4	B	326	334	Right-handed alpha
Helix 77	AI5	B	355	366	Right-handed alpha
Helix 78	AI6	B	366	371	Right-handed alpha
Helix 79	AI7	B	374	391	Right-handed alpha
Helix 80	AI8	B	417	427	Right-handed alpha
Helix 81	AI9	B	431	445	Right-handed alpha
Helix 82	AJ1	B	447	462	Right-handed alpha
Helix 83	AJ2	B	468	495	Right-handed alpha
Helix 84	AJ3	B	508	519	Right-handed alpha
Helix 85	AJ4	B	525	530	Right-handed alpha
Helix 86	AJ5	B	532	539	Right-handed alpha
Helix 87	AJ6	B	540	547	Right-handed 310
Helix 88	AJ7	B	551	557	Right-handed alpha
Helix 89	AJ8	B	558	563	Right-handed 310
Helix 90	AJ9	B	580	598	Right-handed alpha
Helix 91	AK1	B	600	604	Right-handed 310
Helix 92	AK2	B	605	635	Right-handed alpha
Helix 93	AK3	B	648	659	Right-handed alpha
Helix 94	AK4	B	660	671	Right-handed alpha
Helix 95	AK5	B	672	676	Right-handed 310
Helix 96	AK6	B	680	701	Right-handed alpha
Helix 97	AK7	B	705	723	Right-handed alpha
Helix 98	AK8	B	724	726	Right-handed 310
Helix 99	AK9	B	729	742	Right-handed alpha
Helix 100	AL1	B	750	761	Right-handed alpha
Helix 101	AL2	B	768	785	Right-handed alpha
Helix 102	AL3	B	786	788	Right-handed 310
Helix 103	AL4	B	800	812	Right-handed alpha
Helix 104	AL5	B	817	827	Right-handed alpha
Helix 105	AL6	B	831	841	Right-handed alpha
Helix 106	AL7	B	842	845	Right-handed 310
Helix 107	AL8	B	846	855	Right-handed alpha
Helix 108	AL9	B	861	872	Right-handed alpha
Helix 109	AM1	B	878	896	Right-handed alpha
Helix 110	AM2	B	912	922	Right-handed alpha
Helix 111	AM3	B	929	934	Right-handed 310
Helix 112	AM4	B	937	945	Right-handed alpha
Helix 113	AM5	B	950	954	Right-handed 310
Helix 114	AM6	B	955	961	Right-handed 310
Helix 115	AM7	B	963	973	Right-handed alpha
Helix 116	AM8	B	976	992	Right-handed alpha
Helix 117	AM9	B	993	1003	Right-handed alpha
Helix 118	AN1	C	24	40	Right-handed alpha
Helix 119	AN2	C	47	54	Right-handed alpha
Helix 120	AN3	C	58	72	Right-handed alpha
Helix 121	AN4	C	80	95	Right-handed alpha
Helix 122	AN5	C	96	109	Right-handed alpha
Helix 123	AN6	C	115	124	Right-handed alpha
Helix 124	AN7	C	136	146	Right-handed alpha
Helix 125	AN8	C	154	160	Right-handed alpha
Helix 126	AN9	C	179	183	Right-handed 310
Helix 127	AO1	C	186	192	Right-handed alpha
Helix 128	AO2	C	192	197	Right-handed alpha
Helix 129	AO3	C	197	211	Right-handed alpha
Helix 130	AO4	C	222	234	Right-handed alpha
Helix 131	AO5	C	254	264	Right-handed alpha
Helix 132	AO6	C	271	275	Right-handed alpha
Helix 133	AO7	C	281	297	Right-handed alpha
Helix 134	AO8	D	27	40	Right-handed alpha
Helix 135	AO9	D	47	54	Right-handed alpha
Helix 136	AP1	D	58	72	Right-handed alpha
Helix 137	AP2	D	80	95	Right-handed alpha
Helix 138	AP3	D	96	109	Right-handed alpha
Helix 139	AP4	D	115	123	Right-handed alpha
Helix 140	AP5	D	136	146	Right-handed alpha
Helix 141	AP6	D	155	161	Right-handed alpha
Helix 142	AP7	D	179	183	Right-handed 310
Helix 143	AP8	D	186	192	Right-handed alpha
Helix 144	AP9	D	192	197	Right-handed alpha
Helix 145	AQ1	D	197	211	Right-handed alpha
Helix 146	AQ2	D	222	233	Right-handed alpha
Helix 147	AQ3	D	254	264	Right-handed alpha
Helix 148	AQ4	D	271	275	Right-handed alpha
Helix 149	AQ5	D	282	296	Right-handed alpha
Helix 150	AQ6	E	95	107	Right-handed alpha

There are 9 sheets in PDB entry 8WYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	22	24	anti-parallel
Strand 4	E	112	113	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	129	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	216	parallel
Strand 6	C	244	247	parallel
Strand 7	C	267	270	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	38	48	anti-parallel
Strand 4	E	27	33	anti-parallel
Strand 5	E	81	88	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	38	48	anti-parallel
Strand 4	E	115	118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYF