Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WYI entry

There are 8 chains in PDB entry 8WYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 LEU 26PHE 55
b
 LEU 27LYS 54
d
 PHE 22GLY 127
e
 GLN 33LYS 153
f
 GLN 33ASN 154
g
 LYS 26GLN 139
m
 VAL 256SER 292
n
 THR 271ARG 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8WYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
27 55Right-handed alpha
Helix 2
AA2
b
28 54Right-handed alpha
Helix 3
AA3
d
100 127Right-handed alpha
Helix 4
AA4
e
70 74Right-handed 310
Helix 5
AA5
e
126 152Right-handed alpha
Helix 6
AA6
f
126 154Right-handed alpha
Helix 7
AA7
g
113 137Right-handed alpha
Helix 8
AA8
m
260 290Right-handed alpha
Helix 9
AA9
n
272 305Right-handed alpha
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There are 7 sheets in PDB entry 8WYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
45 46first strand
Strand 2
d
68 70anti-parallel
Strand 3
d
85 89anti-parallel
Strand 4
e
110 113parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
96 97first strand
Strand 2
e
123 124anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
37 41first strand
Strand 2
e
44 48anti-parallel
Strand 3
e
82 84anti-parallel
Strand 4
e
76 77anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
37 41first strand
Strand 2
f
44 48anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
58 60first strand
Strand 2
f
97 99anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
114 116first strand
Strand 2
g
100 102parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
32 34first strand
Strand 2
g
43 45anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il