Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WYR entry

There are 12 chains in PDB entry 8WYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 345	TYR 576
B	ILE 345	THR 574
C	ILE 345	ASP 570
D	ILE 345	THR 571
E	ILE 345	ASP 570
F	ILE 345	THR 571
G	ILE 345	SER 569
H	ILE 345	TYR 576
J	GLU 3	TYR 134
K	ILE 345	TYR 576
L	ILE 345	TYR 576
M	PRO 133	CYS 345

There are 48 helices in PDB entry 8WYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	360	Right-handed alpha
Helix 2	AA2	A	460	465	Right-handed alpha
Helix 3	AA3	A	525	530	Right-handed alpha
Helix 4	AA4	B	353	361	Right-handed alpha
Helix 5	AA5	B	414	421	Right-handed alpha
Helix 6	AA6	B	460	466	Right-handed alpha
Helix 7	AA7	B	524	531	Right-handed alpha
Helix 8	AA8	C	353	360	Right-handed alpha
Helix 9	AA9	C	414	420	Right-handed alpha
Helix 10	AB1	C	460	467	Right-handed alpha
Helix 11	AB2	C	524	530	Right-handed alpha
Helix 12	AB3	D	353	361	Right-handed alpha
Helix 13	AB4	D	414	419	Right-handed alpha
Helix 14	AB5	D	460	465	Right-handed alpha
Helix 15	AB6	D	524	530	Right-handed alpha
Helix 16	AB7	D	553	557	Right-handed 310
Helix 17	AB8	E	353	360	Right-handed alpha
Helix 18	AB9	E	414	421	Right-handed alpha
Helix 19	AC1	E	460	467	Right-handed alpha
Helix 20	AC2	E	524	531	Right-handed alpha
Helix 21	AC3	E	553	557	Right-handed 310
Helix 22	AC4	F	353	360	Right-handed alpha
Helix 23	AC5	F	414	421	Right-handed alpha
Helix 24	AC6	F	460	467	Right-handed alpha
Helix 25	AC7	F	524	530	Right-handed alpha
Helix 26	AC8	G	353	361	Right-handed alpha
Helix 27	AC9	G	414	420	Right-handed alpha
Helix 28	AD1	G	460	467	Right-handed alpha
Helix 29	AD2	G	524	531	Right-handed alpha
Helix 30	AD3	G	553	558	Right-handed alpha
Helix 31	AD4	H	355	360	Right-handed alpha
Helix 32	AD5	H	415	420	Right-handed alpha
Helix 33	AD6	H	460	466	Right-handed alpha
Helix 34	AD7	H	525	531	Right-handed alpha
Helix 35	AD8	J	63	68	Right-handed alpha
Helix 36	AD9	K	353	361	Right-handed alpha
Helix 37	AE1	K	414	419	Right-handed alpha
Helix 38	AE2	K	460	467	Right-handed alpha
Helix 39	AE3	K	524	531	Right-handed alpha
Helix 40	AE4	L	353	359	Right-handed alpha
Helix 41	AE5	L	416	421	Right-handed alpha
Helix 42	AE6	L	460	465	Right-handed alpha
Helix 43	AE7	L	524	530	Right-handed alpha
Helix 44	AE8	M	168	179	Right-handed alpha
Helix 45	AE9	M	193	197	Right-handed 310
Helix 46	AF1	M	274	286	Right-handed alpha
Helix 47	AF2	M	295	301	Right-handed alpha
Helix 48	AF3	M	336	340	Right-handed 310

There are 66 sheets in PDB entry 8WYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	369	370	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	412	413	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	428	429	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	404	405	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	439	440	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	B	561	562	parallel
Strand 3	C	561	562	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	B	565	569	parallel
Strand 3	A	565	569	parallel
Strand 4	J	59	61	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	368	369	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	426	427	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	519	523	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	517	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	550	552	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	368	370	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	366	first strand
Strand 2	C	410	413	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	379	383	anti-parallel
Strand 3	C	424	429	anti-parallel
Strand 4	C	437	441	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	470	474	anti-parallel
Strand 3	C	519	523	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	479	first strand
Strand 2	C	515	517	anti-parallel
Strand 3	C	506	507	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	537	539	anti-parallel
Strand 3	C	547	548	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	490	first strand
Strand 2	C	493	494	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	364	370	anti-parallel
Strand 3	D	411	412	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	426	first strand
Strand 2	D	439	441	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	473	474	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	471	first strand
Strand 2	D	519	523	anti-parallel
Strand 3	D	500	502	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	479	first strand
Strand 2	D	515	517	anti-parallel
Strand 3	D	506	507	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	547	552	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	350	first strand
Strand 2	E	363	367	anti-parallel
Strand 3	E	411	413	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	380	first strand
Strand 2	E	428	429	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	384	first strand
Strand 2	E	424	425	anti-parallel
Strand 3	E	440	441	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	486	490	anti-parallel
Strand 3	E	534	538	anti-parallel
Strand 4	E	548	552	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	364	first strand
Strand 2	F	412	413	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	381	382	first strand
Strand 2	F	426	427	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	519	523	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	517	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	487	490	anti-parallel
Strand 3	F	534	539	anti-parallel
Strand 4	F	547	552	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	565	568	first strand
Strand 2	G	565	568	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	349	first strand
Strand 2	G	367	370	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	363	365	first strand
Strand 2	G	411	413	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	470	479	anti-parallel
Strand 3	G	515	523	anti-parallel
Strand 4	G	500	502	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	470	479	anti-parallel
Strand 3	G	515	523	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	486	490	anti-parallel
Strand 3	G	535	538	anti-parallel
Strand 4	G	548	550	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	364	first strand
Strand 2	H	412	413	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	424	425	first strand
Strand 2	H	440	441	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	457	first strand
Strand 2	H	469	479	anti-parallel
Strand 3	H	519	524	anti-parallel
Strand 4	H	500	502	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	457	first strand
Strand 2	H	469	479	anti-parallel
Strand 3	H	515	517	anti-parallel
Strand 4	H	506	507	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	487	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	9	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	33	42	anti-parallel
Strand 4	L	561	569	parallel
Strand 5	K	565	567	parallel

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There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	77	first strand
Strand 2	J	82	86	anti-parallel
Strand 3	L	547	552	parallel
Strand 4	L	534	539	anti-parallel
Strand 5	L	485	490	anti-parallel
Strand 6	L	493	494	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	112	115	first strand
Strand 2	J	122	125	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	363	365	first strand
Strand 2	K	411	413	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	382	383	first strand
Strand 2	K	425	426	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	515	523	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	515	523	anti-parallel
Strand 4	K	506	507	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	485	489	first strand
Strand 2	K	535	539	anti-parallel
Strand 3	K	547	550	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	347	348	first strand
Strand 2	L	365	369	anti-parallel
Strand 3	L	407	411	anti-parallel
Strand 4	L	396	397	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	389	390	first strand
Strand 2	L	381	383	anti-parallel
Strand 3	L	425	427	anti-parallel
Strand 4	L	439	440	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	517	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 3 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	140	141	first strand
Strand 2	M	148	155	anti-parallel
Strand 3	M	158	161	anti-parallel

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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	140	141	first strand
Strand 2	M	148	155	anti-parallel
Strand 3	M	235	237	anti-parallel
Strand 4	M	187	188	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	243	251	first strand
Strand 2	M	254	260	anti-parallel
Strand 3	M	265	268	anti-parallel
Strand 4	M	308	310	parallel

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There are 3 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	243	251	first strand
Strand 2	M	254	260	anti-parallel
Strand 3	M	342	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYR