Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WYS entry

There are 4 chains in PDB entry 8WYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 345	TYR 576
L	ILE 345	TYR 576
M	PRO 133	CYS 345
J	GLU 3	PRO 135

There are 14 helices in PDB entry 8WYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	359	Right-handed alpha
Helix 2	AA2	A	414	419	Right-handed alpha
Helix 3	AA3	A	460	465	Right-handed alpha
Helix 4	AA4	A	525	529	Right-handed alpha
Helix 5	AA5	A	553	558	Right-handed alpha
Helix 6	AA6	L	414	421	Right-handed alpha
Helix 7	AA7	L	460	465	Right-handed alpha
Helix 8	AA8	L	524	529	Right-handed alpha
Helix 9	AA9	M	168	180	Right-handed alpha
Helix 10	AB1	M	274	285	Right-handed alpha
Helix 11	AB2	M	295	300	Right-handed alpha
Helix 12	AB3	M	336	340	Right-handed 310
Helix 13	AB4	J	63	68	Right-handed alpha
Helix 14	AB5	J	129	134	Right-handed alpha

There are 20 sheets in PDB entry 8WYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	369	370	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	412	413	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	425	428	anti-parallel
Strand 3	A	437	438	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	477	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	477	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	568	first strand
Strand 2	J	59	62	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	346	347	first strand
Strand 2	L	365	370	anti-parallel
Strand 3	L	407	411	anti-parallel
Strand 4	L	393	396	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	382	383	first strand
Strand 2	L	424	428	anti-parallel
Strand 3	L	437	441	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	517	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	485	490	anti-parallel
Strand 3	L	534	539	anti-parallel
Strand 4	L	547	552	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	561	569	first strand
Strand 2	J	32	42	parallel
Strand 3	J	15	19	anti-parallel
Strand 4	J	5	10	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	561	569	first strand
Strand 2	J	32	42	parallel
Strand 3	J	21	22	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	140	141	first strand
Strand 2	M	148	155	anti-parallel
Strand 3	M	158	161	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	140	141	first strand
Strand 2	M	148	155	anti-parallel
Strand 3	M	233	238	anti-parallel
Strand 4	M	184	190	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	243	248	first strand
Strand 2	M	254	260	anti-parallel
Strand 3	M	265	267	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	243	248	first strand
Strand 2	M	254	260	anti-parallel
Strand 3	M	342	344	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	77	first strand
Strand 2	J	82	85	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	115	first strand
Strand 2	J	122	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYS