Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WYX entry

There is 1 chain in PDB entry 8WYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 59ILE 1192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 8WYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 64Right-handed alpha
Helix 2
AA2
A
126 135Right-handed alpha
Helix 3
AA3
A
146 155Right-handed alpha
Helix 4
AA4
A
177 194Right-handed alpha
Helix 5
AA5
A
195 199Right-handed 310
Helix 6
AA6
A
200 208Right-handed alpha
Helix 7
AA7
A
238 248Right-handed alpha
Helix 8
AA8
A
250 264Right-handed alpha
Helix 9
AA9
A
267 271Right-handed 310
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
284 296Right-handed alpha
Helix 12
AB3
A
297 299Right-handed 310
Helix 13
AB4
A
311 323Right-handed alpha
Helix 14
AB5
A
324 325Right-handed 310
Helix 15
AB6
A
326 330Right-handed 310
Helix 16
AB7
A
409 424Right-handed alpha
Helix 17
AB8
A
429 439Right-handed alpha
Helix 18
AB9
A
477 497Right-handed alpha
Helix 19
AC1
A
499 517Right-handed alpha
Helix 20
AC2
A
523 536Right-handed alpha
Helix 21
AC3
A
543 545Right-handed 310
Helix 22
AC4
A
546 561Right-handed alpha
Helix 23
AC5
A
563 573Right-handed alpha
Helix 24
AC6
A
587 609Right-handed alpha
Helix 25
AC7
A
610 629Right-handed alpha
Helix 26
AC8
A
633 638Right-handed alpha
Helix 27
AC9
A
644 648Right-handed 310
Helix 28
AD1
A
663 667Right-handed 310
Helix 29
AD2
A
669 679Right-handed alpha
Helix 30
AD3
A
680 696Right-handed alpha
Helix 31
AD4
A
752 758Right-handed alpha
Helix 32
AD5
A
758 768Right-handed alpha
Helix 33
AD6
A
775 787Right-handed alpha
Helix 34
AD7
A
825 838Right-handed alpha
Helix 35
AD8
A
844 875Right-handed alpha
Helix 36
AD9
A
880 891Right-handed alpha
Helix 37
AE1
A
891 908Right-handed alpha
Helix 38
AE2
A
908 924Right-handed alpha
Helix 39
AE3
A
925 927Right-handed 310
Helix 40
AE4
A
936 947Right-handed alpha
Helix 41
AE5
A
947 962Right-handed alpha
Helix 42
AE6
A
979 988Right-handed alpha
Helix 43
AE7
A
1024 1037Right-handed alpha
Helix 44
AE8
A
1037 1042Right-handed alpha
Helix 45
AE9
A
1071 1080Right-handed alpha
Helix 46
AF1
A
1080 1092Right-handed alpha
Helix 47
AF2
A
1093 1109Right-handed alpha
Helix 48
AF3
A
1114 1128Right-handed alpha
Helix 49
AF4
A
1130 1143Right-handed alpha
Helix 50
AF5
A
1145 1159Right-handed alpha
Helix 51
AF6
A
1160 1164Right-handed 310
Helix 52
AF7
A
1173 1183Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8WYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
97 103anti-parallel
Strand 4
A
301 307parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
157 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
579 586parallel
Strand 3
A
363 370anti-parallel
Strand 4
A
457 465anti-parallel
Strand 5
A
443 450anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
727 732anti-parallel
Strand 3
A
929 934parallel
Strand 4
A
739 747anti-parallel
Strand 5
A
812 822anti-parallel
Strand 6
A
789 797anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1050 1055first strand
Strand 2
A
1060 1066anti-parallel
Strand 3
A
1008 1014anti-parallel
Strand 4
A
1166 1172anti-parallel
Strand 5
A
996 1002parallel
Strand 6
A
1188 1191parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il