Analysis of interatomic Contacts of Structural Units in PDB entry:
8WYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WYY entry

There is 1 chain in PDB entry 8WYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 61GLU 1193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8WYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
126 135Right-handed alpha
Helix 2
AA2
A
146 154Right-handed alpha
Helix 3
AA3
A
177 194Right-handed alpha
Helix 4
AA4
A
195 199Right-handed 310
Helix 5
AA5
A
200 208Right-handed alpha
Helix 6
AA6
A
217 221Right-handed 310
Helix 7
AA7
A
238 248Right-handed alpha
Helix 8
AA8
A
250 264Right-handed alpha
Helix 9
AA9
A
267 271Right-handed 310
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
284 296Right-handed alpha
Helix 12
AB3
A
297 299Right-handed 310
Helix 13
AB4
A
311 322Right-handed alpha
Helix 14
AB5
A
326 330Right-handed 310
Helix 15
AB6
A
409 425Right-handed alpha
Helix 16
AB7
A
429 438Right-handed alpha
Helix 17
AB8
A
474 476Right-handed 310
Helix 18
AB9
A
477 497Right-handed alpha
Helix 19
AC1
A
499 517Right-handed alpha
Helix 20
AC2
A
518 520Right-handed 310
Helix 21
AC3
A
522 536Right-handed alpha
Helix 22
AC4
A
547 561Right-handed alpha
Helix 23
AC5
A
563 574Right-handed alpha
Helix 24
AC6
A
592 609Right-handed alpha
Helix 25
AC7
A
610 630Right-handed alpha
Helix 26
AC8
A
633 639Right-handed alpha
Helix 27
AC9
A
670 680Right-handed alpha
Helix 28
AD1
A
680 696Right-handed alpha
Helix 29
AD2
A
752 757Right-handed alpha
Helix 30
AD3
A
758 766Right-handed alpha
Helix 31
AD4
A
775 787Right-handed alpha
Helix 32
AD5
A
825 838Right-handed alpha
Helix 33
AD6
A
844 866Right-handed alpha
Helix 34
AD7
A
866 875Right-handed alpha
Helix 35
AD8
A
876 879Right-handed 310
Helix 36
AD9
A
880 890Right-handed alpha
Helix 37
AE1
A
891 924Right-handed alpha
Helix 38
AE2
A
936 946Right-handed alpha
Helix 39
AE3
A
947 961Right-handed alpha
Helix 40
AE4
A
962 965Right-handed 310
Helix 41
AE5
A
979 988Right-handed alpha
Helix 42
AE6
A
1025 1042Right-handed alpha
Helix 43
AE7
A
1071 1080Right-handed alpha
Helix 44
AE8
A
1080 1091Right-handed alpha
Helix 45
AE9
A
1093 1107Right-handed alpha
Helix 46
AF1
A
1114 1127Right-handed alpha
Helix 47
AF2
A
1130 1143Right-handed alpha
Helix 48
AF3
A
1147 1159Right-handed alpha
Helix 49
AF4
A
1160 1164Right-handed 310
Helix 50
AF5
A
1172 1183Right-handed alpha
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There are 7 sheets in PDB entry 8WYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
301 307parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
157 164anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
235 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
232 233anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
579 587parallel
Strand 3
A
353 355parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
579 587parallel
Strand 3
A
363 370anti-parallel
Strand 4
A
457 463anti-parallel
Strand 5
A
443 450anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
727 733anti-parallel
Strand 3
A
929 935parallel
Strand 4
A
739 747anti-parallel
Strand 5
A
812 822anti-parallel
Strand 6
A
789 797anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1050 1055first strand
Strand 2
A
1060 1068anti-parallel
Strand 3
A
1007 1014anti-parallel
Strand 4
A
1166 1171anti-parallel
Strand 5
A
996 1001parallel
Strand 6
A
1188 1191parallel
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