Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WZ3 entry

There are 9 chains in PDB entry 8WZ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 1	THR 116
F	ASP 1	LYS 107
A	GLN 26	LEU 512
E	GLN 1	THR 116
H	ASP 1	LYS 107
B	GLN 26	LEU 512
G	GLN 1	THR 116
K	ASP 1	LYS 107
C	GLN 26	LEU 512

There are 45 helices in PDB entry 8WZ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	62	65	Right-handed 310
Helix 2	AA2	D	87	91	Right-handed 310
Helix 3	AA3	A	73	98	Right-handed alpha
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	A	148	159	Right-handed alpha
Helix 6	AA6	A	162	171	Right-handed alpha
Helix 7	AA7	A	195	209	Right-handed alpha
Helix 8	AA8	A	217	241	Right-handed alpha
Helix 9	AA9	A	253	262	Right-handed alpha
Helix 10	AB1	A	267	277	Right-handed alpha
Helix 11	AB2	A	277	283	Right-handed alpha
Helix 12	AB3	A	368	372	Right-handed 310
Helix 13	AB4	A	377	385	Right-handed alpha
Helix 14	AB5	A	473	477	Right-handed 310
Helix 15	AB6	A	491	512	Right-handed alpha
Helix 16	AB7	E	62	65	Right-handed 310
Helix 17	AB8	E	87	91	Right-handed 310
Helix 18	AB9	B	73	98	Right-handed alpha
Helix 19	AC1	B	138	142	Right-handed 310
Helix 20	AC2	B	148	159	Right-handed alpha
Helix 21	AC3	B	162	171	Right-handed alpha
Helix 22	AC4	B	195	209	Right-handed alpha
Helix 23	AC5	B	217	241	Right-handed alpha
Helix 24	AC6	B	253	262	Right-handed alpha
Helix 25	AC7	B	267	277	Right-handed alpha
Helix 26	AC8	B	277	283	Right-handed alpha
Helix 27	AC9	B	368	372	Right-handed 310
Helix 28	AD1	B	377	385	Right-handed alpha
Helix 29	AD2	B	473	477	Right-handed 310
Helix 30	AD3	B	491	512	Right-handed alpha
Helix 31	AD4	G	62	65	Right-handed 310
Helix 32	AD5	G	87	91	Right-handed 310
Helix 33	AD6	C	73	98	Right-handed alpha
Helix 34	AD7	C	138	142	Right-handed 310
Helix 35	AD8	C	148	159	Right-handed alpha
Helix 36	AD9	C	162	171	Right-handed alpha
Helix 37	AE1	C	195	209	Right-handed alpha
Helix 38	AE2	C	217	241	Right-handed alpha
Helix 39	AE3	C	253	262	Right-handed alpha
Helix 40	AE4	C	267	277	Right-handed alpha
Helix 41	AE5	C	277	283	Right-handed alpha
Helix 42	AE6	C	368	372	Right-handed 310
Helix 43	AE7	C	377	385	Right-handed alpha
Helix 44	AE8	C	473	477	Right-handed 310
Helix 45	AE9	C	491	512	Right-handed alpha

There are 36 sheets in PDB entry 8WZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	104	106	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	105	106	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	34	38	anti-parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	375	first strand
Strand 2	A	349	352	anti-parallel
Strand 3	A	340	342	anti-parallel
Strand 4	A	314	318	anti-parallel
Strand 5	A	38	40	anti-parallel
Strand 6	A	29	33	anti-parallel
Strand 7	A	465	469	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	45	60	parallel
Strand 4	A	297	309	anti-parallel
Strand 5	A	287	292	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	45	60	parallel
Strand 4	A	364	366	parallel
Strand 5	A	359	360	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	395	398	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	412	416	anti-parallel
Strand 3	A	438	442	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	422	425	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	104	106	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	105	106	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	34	38	anti-parallel
Strand 3	H	85	89	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	349	352	anti-parallel
Strand 3	B	340	342	anti-parallel
Strand 4	B	314	318	anti-parallel
Strand 5	B	38	40	anti-parallel
Strand 6	B	29	33	anti-parallel
Strand 7	B	465	469	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	45	60	parallel
Strand 4	B	297	309	anti-parallel
Strand 5	B	287	292	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	45	60	parallel
Strand 4	B	364	366	parallel
Strand 5	B	359	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	395	398	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	412	416	anti-parallel
Strand 3	B	438	442	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	104	106	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	105	106	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	46	first strand
Strand 2	K	34	38	anti-parallel
Strand 3	K	85	89	anti-parallel
Strand 4	K	102	103	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	349	352	anti-parallel
Strand 3	C	340	342	anti-parallel
Strand 4	C	314	318	anti-parallel
Strand 5	C	38	40	anti-parallel
Strand 6	C	29	33	anti-parallel
Strand 7	C	465	469	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	45	60	parallel
Strand 4	C	297	309	anti-parallel
Strand 5	C	287	292	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	45	60	parallel
Strand 4	C	364	366	parallel
Strand 5	C	359	360	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	395	398	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	412	416	anti-parallel
Strand 3	C	438	442	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	422	425	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WZ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZ3