Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WZ4 entry

There are 3 chains in PDB entry 8WZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 47ILE 309
H
 GLN 1THR 116
L
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8WZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
73 98Right-handed alpha
Helix 2
AA2
C
148 159Right-handed alpha
Helix 3
AA3
C
162 171Right-handed alpha
Helix 4
AA4
C
195 209Right-handed alpha
Helix 5
AA5
C
217 241Right-handed alpha
Helix 6
AA6
C
253 262Right-handed alpha
Helix 7
AA7
C
267 277Right-handed alpha
Helix 8
AA8
C
277 283Right-handed alpha
Helix 9
AA9
H
87 91Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 8WZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
186 194anti-parallel
Strand 3
C
48 60parallel
Strand 4
C
297 308anti-parallel
Strand 5
C
287 292anti-parallel
Strand 6
C
243 244anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 75anti-parallel
Strand 4
L
62 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 13first strand
Strand 2
L
105 106parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 46first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
102 103anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il