Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WZB entry

There are 11 chains in PDB entry 8WZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 46
B	GLN 136	THR 316
C	ASN 229	THR 316
D	ARG 285	HIS 330
E	MET 5	PHE 205
F	LEU 17	GLU 201
G	LEU 206	THR 693
H	MET 1	LEU 276
S	MET 205	THR 693
c	MET 1	LEU 276
I	LEU 17	GLU 201

There are 60 helices in PDB entry 8WZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	10	Right-handed alpha
Helix 2	AA2	A	11	24	Right-handed alpha
Helix 3	AA3	A	28	46	Right-handed alpha
Helix 4	AA4	B	147	154	Right-handed alpha
Helix 5	AA5	B	238	242	Right-handed alpha
Helix 6	AA6	B	303	315	Right-handed alpha
Helix 7	AA7	C	303	315	Right-handed alpha
Helix 8	AA8	D	286	290	Right-handed alpha
Helix 9	AA9	D	290	329	Right-handed alpha
Helix 10	AB1	E	23	25	Right-handed 310
Helix 11	AB2	E	26	38	Right-handed alpha
Helix 12	AB3	E	50	58	Right-handed alpha
Helix 13	AB4	E	67	75	Right-handed alpha
Helix 14	AB5	E	88	98	Right-handed alpha
Helix 15	AB6	E	101	109	Right-handed alpha
Helix 16	AB7	E	112	118	Right-handed alpha
Helix 17	AB8	E	131	143	Right-handed alpha
Helix 18	AB9	E	154	165	Right-handed alpha
Helix 19	AC1	E	165	178	Right-handed alpha
Helix 20	AC2	E	183	195	Right-handed alpha
Helix 21	AC3	G	207	218	Right-handed alpha
Helix 22	AC4	G	227	241	Right-handed alpha
Helix 23	AC5	G	250	261	Right-handed alpha
Helix 24	AC6	G	276	287	Right-handed alpha
Helix 25	AC7	G	313	325	Right-handed alpha
Helix 26	AC8	G	329	347	Right-handed alpha
Helix 27	AC9	G	423	427	Right-handed 310
Helix 28	AD1	G	478	495	Right-handed alpha
Helix 29	AD2	G	532	536	Right-handed 310
Helix 30	AD3	G	617	621	Right-handed 310
Helix 31	AD4	G	683	692	Right-handed alpha
Helix 32	AD5	H	2	9	Right-handed alpha
Helix 33	AD6	H	9	14	Right-handed alpha
Helix 34	AD7	H	21	39	Right-handed alpha
Helix 35	AD8	H	89	94	Right-handed alpha
Helix 36	AD9	H	95	99	Right-handed 310
Helix 37	AE1	H	136	151	Right-handed alpha
Helix 38	AE2	H	216	220	Right-handed 310
Helix 39	AE3	H	271	276	Right-handed alpha
Helix 40	AE4	S	206	218	Right-handed alpha
Helix 41	AE5	S	227	242	Right-handed alpha
Helix 42	AE6	S	250	259	Right-handed alpha
Helix 43	AE7	S	277	286	Right-handed alpha
Helix 44	AE8	S	313	323	Right-handed alpha
Helix 45	AE9	S	330	347	Right-handed alpha
Helix 46	AF1	S	447	452	Right-handed alpha
Helix 47	AF2	S	453	457	Right-handed 310
Helix 48	AF3	S	478	495	Right-handed alpha
Helix 49	AF4	S	531	538	Right-handed alpha
Helix 50	AF5	S	595	599	Right-handed 310
Helix 51	AF6	S	683	693	Right-handed alpha
Helix 52	AF7	c	2	6	Right-handed 310
Helix 53	AF8	c	11	15	Right-handed 310
Helix 54	AF9	c	21	39	Right-handed alpha
Helix 55	AG1	c	89	95	Right-handed alpha
Helix 56	AG2	c	96	99	Right-handed 310
Helix 57	AG3	c	136	151	Right-handed alpha
Helix 58	AG4	c	177	181	Right-handed 310
Helix 59	AG5	c	232	235	Right-handed 310
Helix 60	AG6	c	271	276	Right-handed alpha

There are 23 sheets in PDB entry 8WZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	146	first strand
Strand 2	B	210	217	parallel
Strand 3	B	193	196	anti-parallel
Strand 4	E	201	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	289	297	parallel
Strand 4	B	273	274	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	256	259	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	237	first strand
Strand 2	C	290	297	parallel
Strand 3	C	270	273	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	47	first strand
Strand 2	E	79	85	anti-parallel
Strand 3	E	14	19	anti-parallel
Strand 4	E	126	128	anti-parallel

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There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	35	37	anti-parallel
Strand 3	F	43	44	anti-parallel
Strand 4	F	55	60	anti-parallel
Strand 5	F	66	71	anti-parallel
Strand 6	F	78	83	anti-parallel
Strand 7	F	89	95	anti-parallel
Strand 8	F	98	106	anti-parallel
Strand 9	F	112	115	anti-parallel
Strand 10	F	124	129	anti-parallel
Strand 11	F	136	141	anti-parallel
Strand 12	F	148	153	anti-parallel
Strand 13	F	157	163	anti-parallel
Strand 14	F	171	176	anti-parallel
Strand 15	F	180	185	anti-parallel
Strand 16	F	198	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	47	49	anti-parallel
Strand 3	F	52	53	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	441	442	first strand
Strand 2	G	429	433	anti-parallel
Strand 3	G	365	372	anti-parallel
Strand 4	G	349	358	anti-parallel
Strand 5	G	644	648	parallel
Strand 6	G	633	635	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	496	498	first strand
Strand 2	G	542	544	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	502	503	first strand
Strand 2	G	522	523	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	609	613	first strand
Strand 2	G	622	626	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	84	first strand
Strand 2	H	72	76	anti-parallel
Strand 3	H	57	63	anti-parallel
Strand 4	H	43	50	anti-parallel
Strand 5	H	257	264	parallel
Strand 6	H	247	252	anti-parallel
Strand 7	H	237	241	anti-parallel
Strand 8	H	226	230	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	134	135	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	187	188	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	161	first strand
Strand 2	H	167	169	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	441	442	first strand
Strand 2	S	429	433	anti-parallel
Strand 3	S	365	372	anti-parallel
Strand 4	S	349	358	anti-parallel
Strand 5	S	642	648	parallel
Strand 6	S	633	637	anti-parallel
Strand 7	S	623	627	anti-parallel
Strand 8	S	608	612	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	496	498	first strand
Strand 2	S	542	544	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	83	84	first strand
Strand 2	c	72	76	anti-parallel
Strand 3	c	57	63	anti-parallel
Strand 4	c	43	50	anti-parallel
Strand 5	c	259	264	parallel
Strand 6	c	247	250	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	110	112	first strand
Strand 2	c	133	135	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	153	155	first strand
Strand 2	c	187	189	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	159	160	first strand
Strand 2	c	168	169	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	226	231	first strand
Strand 2	c	236	241	anti-parallel

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There are 15 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	30	37	anti-parallel
Strand 3	I	43	49	anti-parallel
Strand 4	I	52	60	anti-parallel
Strand 5	I	66	71	anti-parallel
Strand 6	I	76	83	anti-parallel
Strand 7	I	89	94	anti-parallel
Strand 8	I	99	106	anti-parallel
Strand 9	I	112	117	anti-parallel
Strand 10	I	122	129	anti-parallel
Strand 11	I	136	141	anti-parallel
Strand 12	I	146	153	anti-parallel
Strand 13	I	157	163	anti-parallel
Strand 14	I	168	176	anti-parallel
Strand 15	I	181	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZB