Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WZU entry

There are 2 chains in PDB entry 8WZU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 698
B	MET 1	LEU 698

There are 49 helices in PDB entry 8WZU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	23	34	Right-handed alpha
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	77	88	Right-handed alpha
Helix 5	AA5	A	104	121	Right-handed alpha
Helix 6	AA6	A	162	177	Right-handed alpha
Helix 7	AA7	A	193	203	Right-handed alpha
Helix 8	AA8	A	219	233	Right-handed alpha
Helix 9	AA9	A	246	258	Right-handed alpha
Helix 10	AB1	A	263	274	Right-handed alpha
Helix 11	AB2	A	282	295	Right-handed alpha
Helix 12	AB3	A	309	323	Right-handed alpha
Helix 13	AB4	A	330	332	Right-handed 310
Helix 14	AB5	A	333	341	Right-handed alpha
Helix 15	AB6	A	358	372	Right-handed alpha
Helix 16	AB7	A	389	404	Right-handed alpha
Helix 17	AB8	A	417	428	Right-handed alpha
Helix 18	AB9	A	435	455	Right-handed alpha
Helix 19	AC1	A	470	480	Right-handed alpha
Helix 20	AC2	A	486	496	Right-handed alpha
Helix 21	AC3	A	497	499	Right-handed 310
Helix 22	AC4	A	609	614	Right-handed alpha
Helix 23	AC5	A	624	635	Right-handed alpha
Helix 24	AC6	A	638	643	Right-handed alpha
Helix 25	AC7	A	651	669	Right-handed alpha
Helix 26	AC8	B	3	8	Right-handed alpha
Helix 27	AC9	B	23	34	Right-handed alpha
Helix 28	AD1	B	74	76	Right-handed 310
Helix 29	AD2	B	77	88	Right-handed alpha
Helix 30	AD3	B	105	121	Right-handed alpha
Helix 31	AD4	B	162	177	Right-handed alpha
Helix 32	AD5	B	193	203	Right-handed alpha
Helix 33	AD6	B	220	233	Right-handed alpha
Helix 34	AD7	B	246	258	Right-handed alpha
Helix 35	AD8	B	263	274	Right-handed alpha
Helix 36	AD9	B	282	295	Right-handed alpha
Helix 37	AE1	B	309	323	Right-handed alpha
Helix 38	AE2	B	330	332	Right-handed 310
Helix 39	AE3	B	333	341	Right-handed alpha
Helix 40	AE4	B	358	372	Right-handed alpha
Helix 41	AE5	B	389	404	Right-handed alpha
Helix 42	AE6	B	418	428	Right-handed alpha
Helix 43	AE7	B	435	455	Right-handed alpha
Helix 44	AE8	B	466	480	Right-handed alpha
Helix 45	AE9	B	486	497	Right-handed alpha
Helix 46	AF1	B	608	614	Right-handed alpha
Helix 47	AF2	B	624	635	Right-handed alpha
Helix 48	AF3	B	637	642	Right-handed alpha
Helix 49	AF4	B	651	669	Right-handed alpha

There are 12 sheets in PDB entry 8WZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	11	15	parallel
Strand 3	A	68	71	parallel
Strand 4	A	92	95	parallel
Strand 5	A	124	126	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	53	54	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	132	135	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	153	160	parallel
Strand 5	A	209	214	parallel
Strand 6	A	238	242	parallel
Strand 7	A	277	278	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	302	307	parallel
Strand 3	A	375	382	parallel
Strand 4	A	407	412	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	620	first strand
Strand 2	A	598	605	anti-parallel
Strand 3	A	585	594	anti-parallel
Strand 4	A	674	682	anti-parallel
Strand 5	A	689	691	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	620	first strand
Strand 2	A	598	605	anti-parallel
Strand 3	A	585	594	anti-parallel
Strand 4	A	674	682	anti-parallel
Strand 5	A	695	697	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	11	15	parallel
Strand 3	B	68	71	parallel
Strand 4	B	92	95	parallel
Strand 5	B	124	125	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	53	54	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	180	185	anti-parallel
Strand 4	B	153	160	parallel
Strand 5	B	209	214	parallel
Strand 6	B	238	242	parallel
Strand 7	B	277	278	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	302	307	parallel
Strand 3	B	375	382	parallel
Strand 4	B	407	412	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	620	first strand
Strand 2	B	598	605	anti-parallel
Strand 3	B	586	594	anti-parallel
Strand 4	B	674	682	anti-parallel
Strand 5	B	689	691	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	620	first strand
Strand 2	B	598	605	anti-parallel
Strand 3	B	586	594	anti-parallel
Strand 4	B	674	682	anti-parallel
Strand 5	B	695	697	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WZU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WZU