Analysis of interatomic Contacts of Structural Units in PDB entry:
8X06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X06 entry

There are 4 chains in PDB entry 8X06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	TYR 587
C	THR 4	PRO 63
D	LEU 5	PRO 63
B	THR 320	ARG 907

There are 19 helices in PDB entry 8X06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed 310
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	127	131	Right-handed 310
Helix 4	AA4	A	256	268	Right-handed alpha
Helix 5	AA5	A	323	329	Right-handed alpha
Helix 6	AA6	A	352	358	Right-handed alpha
Helix 7	AA7	A	394	396	Right-handed 310
Helix 8	AA8	A	435	447	Right-handed alpha
Helix 9	AA9	A	448	452	Right-handed 310
Helix 10	AB1	C	7	18	Right-handed alpha
Helix 11	AB2	C	42	48	Right-handed alpha
Helix 12	AB3	C	53	58	Right-handed alpha
Helix 13	AB4	C	59	61	Right-handed 310
Helix 14	AB5	D	9	15	Right-handed alpha
Helix 15	AB6	D	53	57	Right-handed 310
Helix 16	AB7	B	542	546	Right-handed alpha
Helix 17	AB8	B	625	631	Right-handed alpha
Helix 18	AB9	B	632	634	Right-handed 310
Helix 19	AC1	B	882	904	Right-handed alpha

There are 14 sheets in PDB entry 8X06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	28	29	parallel
Strand 3	A	56	57	parallel
Strand 4	A	81	82	parallel
Strand 5	A	111	112	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	61	66	parallel
Strand 3	A	93	96	parallel
Strand 4	A	117	120	parallel
Strand 5	A	144	145	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	254	255	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	302	303	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	335	337	parallel
Strand 3	A	363	365	parallel
Strand 4	A	387	389	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	341	342	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	398	402	parallel
Strand 3	A	425	428	parallel
Strand 4	A	456	457	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	487	first strand
Strand 2	A	551	554	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	534	first strand
Strand 2	A	503	506	anti-parallel
Strand 3	A	565	568	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	526	first strand
Strand 2	B	553	554	parallel
Strand 3	B	577	578	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	560	first strand
Strand 2	B	590	592	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	670	first strand
Strand 2	B	675	679	anti-parallel
Strand 3	B	740	742	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	724	first strand
Strand 2	B	690	699	anti-parallel
Strand 3	B	751	760	anti-parallel
Strand 4	B	776	779	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X06

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X06