Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X0C entry

There are 2 chains in PDB entry 8X0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	ALA 827
B	ARG 25	ALA 827

There are 48 helices in PDB entry 8X0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	101	114	Right-handed alpha
Helix 3	AA3	A	151	163	Right-handed alpha
Helix 4	AA4	A	164	166	Right-handed 310
Helix 5	AA5	A	176	181	Right-handed 310
Helix 6	AA6	A	195	209	Right-handed alpha
Helix 7	AA7	A	222	239	Right-handed alpha
Helix 8	AA8	A	253	266	Right-handed alpha
Helix 9	AA9	A	279	294	Right-handed alpha
Helix 10	AB1	A	317	322	Right-handed alpha
Helix 11	AB2	A	334	342	Right-handed alpha
Helix 12	AB3	A	354	363	Right-handed alpha
Helix 13	AB4	A	396	419	Right-handed alpha
Helix 14	AB5	A	426	430	Right-handed 310
Helix 15	AB6	A	433	444	Right-handed alpha
Helix 16	AB7	A	577	604	Right-handed alpha
Helix 17	AB8	A	614	636	Right-handed alpha
Helix 18	AB9	A	640	675	Right-handed alpha
Helix 19	AC1	A	690	715	Right-handed alpha
Helix 20	AC2	A	736	762	Right-handed alpha
Helix 21	AC3	A	769	788	Right-handed alpha
Helix 22	AC4	A	788	795	Right-handed alpha
Helix 23	AC5	A	797	817	Right-handed alpha
Helix 24	AC6	A	818	827	Right-handed alpha
Helix 25	AC7	B	65	82	Right-handed alpha
Helix 26	AC8	B	101	113	Right-handed alpha
Helix 27	AC9	B	151	163	Right-handed alpha
Helix 28	AD1	B	164	166	Right-handed 310
Helix 29	AD2	B	176	181	Right-handed 310
Helix 30	AD3	B	194	209	Right-handed alpha
Helix 31	AD4	B	222	239	Right-handed alpha
Helix 32	AD5	B	253	266	Right-handed alpha
Helix 33	AD6	B	279	293	Right-handed alpha
Helix 34	AD7	B	310	314	Right-handed 310
Helix 35	AD8	B	317	322	Right-handed alpha
Helix 36	AD9	B	334	342	Right-handed alpha
Helix 37	AE1	B	354	363	Right-handed alpha
Helix 38	AE2	B	396	419	Right-handed alpha
Helix 39	AE3	B	433	444	Right-handed alpha
Helix 40	AE4	B	560	563	Right-handed 310
Helix 41	AE5	B	577	604	Right-handed alpha
Helix 42	AE6	B	616	636	Right-handed alpha
Helix 43	AE7	B	640	675	Right-handed alpha
Helix 44	AE8	B	692	715	Right-handed alpha
Helix 45	AE9	B	736	762	Right-handed alpha
Helix 46	AF1	B	769	788	Right-handed alpha
Helix 47	AF2	B	797	816	Right-handed alpha
Helix 48	AF3	B	818	827	Right-handed alpha

There are 15 sheets in PDB entry 8X0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	171	parallel
Strand 6	A	188	190	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	213	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	302	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	466	473	anti-parallel
Strand 3	A	479	487	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	524	first strand
Strand 2	A	532	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	548	551	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	732	733	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	213	219	parallel
Strand 3	B	273	277	parallel
Strand 4	B	300	302	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	466	475	anti-parallel
Strand 3	B	478	488	anti-parallel
Strand 4	B	491	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	523	first strand
Strand 2	B	533	536	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	549	551	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	558	first strand
Strand 2	B	565	566	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0C