Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X0D entry

There are 2 chains in PDB entry 8X0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	ALA 827
B	ARG 25	ALA 827

There are 50 helices in PDB entry 8X0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	101	114	Right-handed alpha
Helix 3	AA3	A	151	163	Right-handed alpha
Helix 4	AA4	A	164	166	Right-handed 310
Helix 5	AA5	A	176	181	Right-handed 310
Helix 6	AA6	A	194	209	Right-handed alpha
Helix 7	AA7	A	222	238	Right-handed alpha
Helix 8	AA8	A	253	266	Right-handed alpha
Helix 9	AA9	A	279	293	Right-handed alpha
Helix 10	AB1	A	317	321	Right-handed 310
Helix 11	AB2	A	334	342	Right-handed alpha
Helix 12	AB3	A	354	363	Right-handed alpha
Helix 13	AB4	A	396	419	Right-handed alpha
Helix 14	AB5	A	426	430	Right-handed 310
Helix 15	AB6	A	433	444	Right-handed alpha
Helix 16	AB7	A	577	604	Right-handed alpha
Helix 17	AB8	A	607	611	Right-handed 310
Helix 18	AB9	A	614	636	Right-handed alpha
Helix 19	AC1	A	640	675	Right-handed alpha
Helix 20	AC2	A	690	715	Right-handed alpha
Helix 21	AC3	A	736	762	Right-handed alpha
Helix 22	AC4	A	769	788	Right-handed alpha
Helix 23	AC5	A	788	794	Right-handed alpha
Helix 24	AC6	A	797	817	Right-handed alpha
Helix 25	AC7	A	818	827	Right-handed alpha
Helix 26	AC8	B	65	82	Right-handed alpha
Helix 27	AC9	B	101	114	Right-handed alpha
Helix 28	AD1	B	151	163	Right-handed alpha
Helix 29	AD2	B	164	166	Right-handed 310
Helix 30	AD3	B	176	181	Right-handed 310
Helix 31	AD4	B	194	209	Right-handed alpha
Helix 32	AD5	B	222	239	Right-handed alpha
Helix 33	AD6	B	253	266	Right-handed alpha
Helix 34	AD7	B	279	293	Right-handed alpha
Helix 35	AD8	B	317	321	Right-handed 310
Helix 36	AD9	B	334	342	Right-handed alpha
Helix 37	AE1	B	354	363	Right-handed alpha
Helix 38	AE2	B	396	419	Right-handed alpha
Helix 39	AE3	B	426	430	Right-handed 310
Helix 40	AE4	B	433	444	Right-handed alpha
Helix 41	AE5	B	560	563	Right-handed 310
Helix 42	AE6	B	577	604	Right-handed alpha
Helix 43	AE7	B	616	636	Right-handed alpha
Helix 44	AE8	B	640	675	Right-handed alpha
Helix 45	AE9	B	691	715	Right-handed alpha
Helix 46	AF1	B	736	761	Right-handed alpha
Helix 47	AF2	B	769	788	Right-handed alpha
Helix 48	AF3	B	788	793	Right-handed alpha
Helix 49	AF4	B	797	817	Right-handed alpha
Helix 50	AF5	B	818	827	Right-handed alpha

There are 16 sheets in PDB entry 8X0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	35	41	parallel
Strand 3	A	143	147	parallel
Strand 4	A	169	171	parallel
Strand 5	A	188	190	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	213	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	302	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	466	475	anti-parallel
Strand 3	A	478	488	anti-parallel
Strand 4	A	491	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	528	first strand
Strand 2	A	531	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	548	551	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	558	first strand
Strand 2	A	565	567	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	730	733	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	213	219	parallel
Strand 3	B	273	277	parallel
Strand 4	B	300	302	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	466	475	anti-parallel
Strand 3	B	478	488	anti-parallel
Strand 4	B	491	494	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	523	first strand
Strand 2	B	533	536	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	545	first strand
Strand 2	B	548	551	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	558	first strand
Strand 2	B	565	567	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0D