Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X0F entry

There are 2 chains in PDB entry 8X0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	ALA 827
B	ARG 25	ALA 827

There are 47 helices in PDB entry 8X0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	65	82	Right-handed alpha
Helix 3	AA3	A	101	113	Right-handed alpha
Helix 4	AA4	A	151	163	Right-handed alpha
Helix 5	AA5	A	164	166	Right-handed 310
Helix 6	AA6	A	176	181	Right-handed 310
Helix 7	AA7	A	194	209	Right-handed alpha
Helix 8	AA8	A	222	237	Right-handed alpha
Helix 9	AA9	A	253	266	Right-handed alpha
Helix 10	AB1	A	279	293	Right-handed alpha
Helix 11	AB2	A	317	322	Right-handed alpha
Helix 12	AB3	A	334	342	Right-handed alpha
Helix 13	AB4	A	354	363	Right-handed alpha
Helix 14	AB5	A	396	419	Right-handed alpha
Helix 15	AB6	A	433	443	Right-handed alpha
Helix 16	AB7	A	577	604	Right-handed alpha
Helix 17	AB8	A	614	635	Right-handed alpha
Helix 18	AB9	A	643	670	Right-handed alpha
Helix 19	AC1	A	691	715	Right-handed alpha
Helix 20	AC2	A	736	762	Right-handed alpha
Helix 21	AC3	A	770	795	Right-handed alpha
Helix 22	AC4	A	798	827	Right-handed alpha
Helix 23	AC5	B	65	81	Right-handed alpha
Helix 24	AC6	B	101	114	Right-handed alpha
Helix 25	AC7	B	115	117	Right-handed 310
Helix 26	AC8	B	151	163	Right-handed alpha
Helix 27	AC9	B	164	166	Right-handed 310
Helix 28	AD1	B	176	181	Right-handed 310
Helix 29	AD2	B	195	209	Right-handed alpha
Helix 30	AD3	B	222	237	Right-handed alpha
Helix 31	AD4	B	253	267	Right-handed alpha
Helix 32	AD5	B	279	293	Right-handed alpha
Helix 33	AD6	B	317	321	Right-handed 310
Helix 34	AD7	B	334	342	Right-handed alpha
Helix 35	AD8	B	354	363	Right-handed alpha
Helix 36	AD9	B	396	419	Right-handed alpha
Helix 37	AE1	B	433	442	Right-handed alpha
Helix 38	AE2	B	560	563	Right-handed 310
Helix 39	AE3	B	577	604	Right-handed alpha
Helix 40	AE4	B	607	611	Right-handed 310
Helix 41	AE5	B	616	636	Right-handed alpha
Helix 42	AE6	B	640	670	Right-handed alpha
Helix 43	AE7	B	692	715	Right-handed alpha
Helix 44	AE8	B	736	764	Right-handed alpha
Helix 45	AE9	B	769	787	Right-handed alpha
Helix 46	AF1	B	787	795	Right-handed alpha
Helix 47	AF2	B	798	827	Right-handed alpha

There are 14 sheets in PDB entry 8X0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	35	41	parallel
Strand 3	A	143	148	parallel
Strand 4	A	169	171	parallel
Strand 5	A	188	190	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	213	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	302	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	466	473	anti-parallel
Strand 3	A	479	488	anti-parallel
Strand 4	A	491	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	447	first strand
Strand 2	A	453	454	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	732	733	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	35	41	parallel
Strand 3	B	143	147	parallel
Strand 4	B	169	171	parallel
Strand 5	B	188	190	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	213	219	parallel
Strand 3	B	273	277	parallel
Strand 4	B	300	302	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	467	475	anti-parallel
Strand 3	B	478	483	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	535	536	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	549	551	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	558	first strand
Strand 2	B	565	566	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0F