Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X0P entry

There are 6 chains in PDB entry 8X0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 17	SER 531
B	GLY 17	SER 531
C	GLY 17	SER 531
D	GLY 17	SER 531
E	THR 19	SER 531
F	THR 19	SER 531

There are138 helices in PDB entry 8X0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	45	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	73	84	Right-handed alpha
Helix 5	AA5	A	85	89	Right-handed 310
Helix 6	AA6	A	106	120	Right-handed alpha
Helix 7	AA7	A	129	147	Right-handed alpha
Helix 8	AA8	A	166	187	Right-handed alpha
Helix 9	AA9	A	188	192	Right-handed 310
Helix 10	AB1	A	204	213	Right-handed alpha
Helix 11	AB2	A	216	218	Right-handed 310
Helix 12	AB3	A	226	230	Right-handed 310
Helix 13	AB4	A	234	248	Right-handed alpha
Helix 14	AB5	A	269	280	Right-handed alpha
Helix 15	AB6	A	290	297	Right-handed 310
Helix 16	AB7	A	300	305	Right-handed 310
Helix 17	AB8	A	317	321	Right-handed alpha
Helix 18	AB9	A	334	343	Right-handed alpha
Helix 19	AC1	A	361	366	Right-handed 310
Helix 20	AC2	A	374	410	Right-handed alpha
Helix 21	AC3	A	458	475	Right-handed alpha
Helix 22	AC4	A	502	523	Right-handed alpha
Helix 23	AC5	A	525	530	Right-handed alpha
Helix 24	AC6	B	23	45	Right-handed alpha
Helix 25	AC7	B	57	63	Right-handed alpha
Helix 26	AC8	B	73	84	Right-handed alpha
Helix 27	AC9	B	85	89	Right-handed 310
Helix 28	AD1	B	106	120	Right-handed alpha
Helix 29	AD2	B	125	128	Right-handed 310
Helix 30	AD3	B	129	147	Right-handed alpha
Helix 31	AD4	B	150	154	Right-handed 310
Helix 32	AD5	B	166	187	Right-handed alpha
Helix 33	AD6	B	188	192	Right-handed 310
Helix 34	AD7	B	204	213	Right-handed alpha
Helix 35	AD8	B	216	218	Right-handed 310
Helix 36	AD9	B	226	230	Right-handed 310
Helix 37	AE1	B	234	247	Right-handed alpha
Helix 38	AE2	B	269	280	Right-handed alpha
Helix 39	AE3	B	290	297	Right-handed 310
Helix 40	AE4	B	300	305	Right-handed 310
Helix 41	AE5	B	306	310	Right-handed 310
Helix 42	AE6	B	334	343	Right-handed alpha
Helix 43	AE7	B	361	366	Right-handed 310
Helix 44	AE8	B	373	409	Right-handed alpha
Helix 45	AE9	B	458	475	Right-handed alpha
Helix 46	AF1	B	502	523	Right-handed alpha
Helix 47	AF2	B	525	530	Right-handed alpha
Helix 48	AF3	C	23	45	Right-handed alpha
Helix 49	AF4	C	46	48	Right-handed 310
Helix 50	AF5	C	57	63	Right-handed alpha
Helix 51	AF6	C	73	84	Right-handed alpha
Helix 52	AF7	C	85	89	Right-handed 310
Helix 53	AF8	C	106	120	Right-handed alpha
Helix 54	AF9	C	129	147	Right-handed alpha
Helix 55	AG1	C	150	154	Right-handed 310
Helix 56	AG2	C	166	184	Right-handed alpha
Helix 57	AG3	C	187	192	Right-handed 310
Helix 58	AG4	C	204	213	Right-handed alpha
Helix 59	AG5	C	226	230	Right-handed 310
Helix 60	AG6	C	234	248	Right-handed alpha
Helix 61	AG7	C	269	278	Right-handed alpha
Helix 62	AG8	C	291	297	Right-handed 310
Helix 63	AG9	C	300	305	Right-handed 310
Helix 64	AH1	C	317	321	Right-handed alpha
Helix 65	AH2	C	334	343	Right-handed alpha
Helix 66	AH3	C	361	366	Right-handed 310
Helix 67	AH4	C	374	411	Right-handed alpha
Helix 68	AH5	C	458	477	Right-handed alpha
Helix 69	AH6	C	502	523	Right-handed alpha
Helix 70	AH7	C	525	531	Right-handed alpha
Helix 71	AH8	D	23	45	Right-handed alpha
Helix 72	AH9	D	57	63	Right-handed alpha
Helix 73	AI1	D	73	84	Right-handed alpha
Helix 74	AI2	D	85	89	Right-handed 310
Helix 75	AI3	D	106	120	Right-handed alpha
Helix 76	AI4	D	129	147	Right-handed alpha
Helix 77	AI5	D	150	154	Right-handed 310
Helix 78	AI6	D	166	187	Right-handed alpha
Helix 79	AI7	D	188	192	Right-handed 310
Helix 80	AI8	D	203	213	Right-handed alpha
Helix 81	AI9	D	226	230	Right-handed 310
Helix 82	AJ1	D	234	248	Right-handed alpha
Helix 83	AJ2	D	269	280	Right-handed alpha
Helix 84	AJ3	D	292	297	Right-handed 310
Helix 85	AJ4	D	300	305	Right-handed 310
Helix 86	AJ5	D	306	310	Right-handed 310
Helix 87	AJ6	D	334	343	Right-handed alpha
Helix 88	AJ7	D	346	350	Right-handed 310
Helix 89	AJ8	D	361	366	Right-handed 310
Helix 90	AJ9	D	374	411	Right-handed alpha
Helix 91	AK1	D	458	476	Right-handed alpha
Helix 92	AK2	D	502	523	Right-handed alpha
Helix 93	AK3	E	23	43	Right-handed alpha
Helix 94	AK4	E	57	63	Right-handed alpha
Helix 95	AK5	E	74	83	Right-handed alpha
Helix 96	AK6	E	106	120	Right-handed alpha
Helix 97	AK7	E	129	147	Right-handed alpha
Helix 98	AK8	E	166	187	Right-handed alpha
Helix 99	AK9	E	190	192	Right-handed 310
Helix 100	AL1	E	204	213	Right-handed alpha
Helix 101	AL2	E	216	218	Right-handed 310
Helix 102	AL3	E	234	247	Right-handed alpha
Helix 103	AL4	E	269	280	Right-handed alpha
Helix 104	AL5	E	291	297	Right-handed 310
Helix 105	AL6	E	300	304	Right-handed 310
Helix 106	AL7	E	306	310	Right-handed 310
Helix 107	AL8	E	317	321	Right-handed alpha
Helix 108	AL9	E	334	343	Right-handed alpha
Helix 109	AM1	E	361	365	Right-handed 310
Helix 110	AM2	E	373	375	Right-handed 310
Helix 111	AM3	E	376	384	Right-handed alpha
Helix 112	AM4	E	386	411	Right-handed alpha
Helix 113	AM5	E	458	476	Right-handed alpha
Helix 114	AM6	E	502	523	Right-handed alpha
Helix 115	AM7	F	23	44	Right-handed alpha
Helix 116	AM8	F	45	48	Right-handed 310
Helix 117	AM9	F	57	62	Right-handed alpha
Helix 118	AN1	F	75	83	Right-handed alpha
Helix 119	AN2	F	85	89	Right-handed 310
Helix 120	AN3	F	106	120	Right-handed alpha
Helix 121	AN4	F	129	147	Right-handed alpha
Helix 122	AN5	F	166	187	Right-handed alpha
Helix 123	AN6	F	188	191	Right-handed 310
Helix 124	AN7	F	203	213	Right-handed alpha
Helix 125	AN8	F	234	248	Right-handed alpha
Helix 126	AN9	F	269	278	Right-handed alpha
Helix 127	AO1	F	279	281	Right-handed 310
Helix 128	AO2	F	292	297	Right-handed 310
Helix 129	AO3	F	301	305	Right-handed 310
Helix 130	AO4	F	306	310	Right-handed 310
Helix 131	AO5	F	334	343	Right-handed alpha
Helix 132	AO6	F	361	366	Right-handed 310
Helix 133	AO7	F	373	382	Right-handed alpha
Helix 134	AO8	F	387	410	Right-handed alpha
Helix 135	AO9	F	458	476	Right-handed alpha
Helix 136	AP1	F	502	507	Right-handed alpha
Helix 137	AP2	F	511	521	Right-handed alpha
Helix 138	AP3	F	526	530	Right-handed 310

There are 12 sheets in PDB entry 8X0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	312	316	anti-parallel
Strand 4	A	283	287	parallel
Strand 5	A	251	255	parallel
Strand 6	A	194	199	parallel
Strand 7	A	220	223	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	424	429	anti-parallel
Strand 3	A	489	495	anti-parallel
Strand 4	A	483	486	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	164	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	312	316	anti-parallel
Strand 4	B	283	287	parallel
Strand 5	B	251	255	parallel
Strand 6	B	194	199	parallel
Strand 7	B	220	223	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	489	495	anti-parallel
Strand 4	B	482	486	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	164	first strand
Strand 2	C	328	332	anti-parallel
Strand 3	C	312	316	anti-parallel
Strand 4	C	283	287	parallel
Strand 5	C	251	255	parallel
Strand 6	C	194	199	parallel
Strand 7	C	220	223	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	416	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	489	495	anti-parallel
Strand 4	C	482	486	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	164	first strand
Strand 2	D	328	332	anti-parallel
Strand 3	D	312	316	anti-parallel
Strand 4	D	283	287	parallel
Strand 5	D	251	255	parallel
Strand 6	D	194	199	parallel
Strand 7	D	220	223	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	416	first strand
Strand 2	D	424	429	anti-parallel
Strand 3	D	489	495	anti-parallel
Strand 4	D	482	486	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	480	486	parallel
Strand 3	E	489	495	anti-parallel
Strand 4	E	424	429	anti-parallel
Strand 5	E	414	416	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	164	first strand
Strand 2	E	328	332	anti-parallel
Strand 3	E	312	316	anti-parallel
Strand 4	E	283	287	parallel
Strand 5	E	251	255	parallel
Strand 6	E	194	199	parallel
Strand 7	E	220	223	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	328	332	anti-parallel
Strand 3	F	312	316	anti-parallel
Strand 4	F	283	287	parallel
Strand 5	F	251	255	parallel
Strand 6	F	194	199	parallel
Strand 7	F	220	223	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	414	416	first strand
Strand 2	F	424	429	anti-parallel
Strand 3	F	489	495	anti-parallel
Strand 4	F	483	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0P