Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X0Y entry

There are 6 chains in PDB entry 8X0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 333	LYS 528
E	VAL 2	CYS 219
F	ASP 1	GLU 212
A	ASN 334	LYS 528
G	VAL 2	LYS 217
I	ASP 1	GLU 212

There are 31 helices in PDB entry 8X0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	338	343	Right-handed alpha
Helix 2	AA2	B	349	353	Right-handed 310
Helix 3	AA3	B	365	370	Right-handed alpha
Helix 4	AA4	B	385	389	Right-handed 310
Helix 5	AA5	B	405	410	Right-handed 310
Helix 6	AA6	B	416	422	Right-handed alpha
Helix 7	AA7	B	438	443	Right-handed alpha
Helix 8	AA8	B	502	505	Right-handed 310
Helix 9	AA9	E	64	66	Right-handed 310
Helix 10	AB1	E	87	91	Right-handed 310
Helix 11	AB2	E	159	161	Right-handed 310
Helix 12	AB3	E	190	194	Right-handed 310
Helix 13	AB4	E	204	207	Right-handed 310
Helix 14	AB5	F	79	83	Right-handed 310
Helix 15	AB6	F	120	126	Right-handed alpha
Helix 16	AB7	F	182	187	Right-handed alpha
Helix 17	AB8	A	337	343	Right-handed alpha
Helix 18	AB9	A	349	353	Right-handed 310
Helix 19	AC1	A	365	370	Right-handed alpha
Helix 20	AC2	A	383	389	Right-handed 310
Helix 21	AC3	A	405	410	Right-handed 310
Helix 22	AC4	A	416	422	Right-handed alpha
Helix 23	AC5	A	438	443	Right-handed alpha
Helix 24	AC6	A	502	505	Right-handed 310
Helix 25	AC7	G	64	66	Right-handed 310
Helix 26	AC8	G	87	91	Right-handed 310
Helix 27	AC9	G	159	161	Right-handed 310
Helix 28	AD1	G	204	207	Right-handed 310
Helix 29	AD2	I	79	83	Right-handed 310
Helix 30	AD3	I	120	126	Right-handed alpha
Helix 31	AD4	I	182	187	Right-handed alpha

There are 30 sheets in PDB entry 8X0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	41	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	103	106	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	166	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	172	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	198	203	anti-parallel
Strand 3	E	208	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	101	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	101	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	96	97	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	128	138	anti-parallel
Strand 3	F	172	181	anti-parallel
Strand 4	F	158	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	144	149	anti-parallel
Strand 3	F	190	196	anti-parallel
Strand 4	F	204	209	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	403	anti-parallel
Strand 3	A	522	525	anti-parallel
Strand 4	A	361	362	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	403	anti-parallel
Strand 3	A	507	517	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	103	106	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	139	148	anti-parallel
Strand 3	G	179	187	anti-parallel
Strand 4	G	166	168	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	139	148	anti-parallel
Strand 3	G	179	187	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	198	203	anti-parallel
Strand 3	G	208	213	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	101	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	101	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	96	97	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	113	117	first strand
Strand 2	I	128	138	anti-parallel
Strand 3	I	172	181	anti-parallel
Strand 4	I	158	162	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	153	first strand
Strand 2	I	143	149	anti-parallel
Strand 3	I	190	197	anti-parallel
Strand 4	I	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X0Y